Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00579 ATGTCAGCGGCGTCGCCGTCTCCGGCGTCTTCCACCGCTGCGCCACCGCCACAAACACCCTCTTCAAATACTAGTCCGCCACCGTCCTCTGCCGCCACTCCGCCACCGCAACAACCCTCTTCCCCCGCACCTAATAGTTCAGTTTCACCTCCACCACAAACCCCTCCGCCACCTCCGGCCACCCCACCTGCTCCTCCTCCCGCCCCGCCGTTATCTCCTCCGCCGTCACAACCGCCTCCGGCTTCCCCTCCATTGACGCCTCCAACAGCTTCCCCTCCAACCCCAACATCACGCCCTCCTCCGCCGCCACAACCGCCGCCGCCACTATTTCCGGCACGTCCATCACCTCCTCCACAATCACCGATTCCACCAAGAAGCTCTCCTCCGCCCACTCCACCGCCGCGATCAGCTCCTCCGCCGTCAAACCCTCCTAACAACCCATCTCCTCCGCCAGCATCACCGCCCCGGGAGAATTCACCCCCTCCTTCGGCCACGGTGCCACCACCCCGGGCTTCACCTCCACCGCCACCACCACAATCATCTGTACCACCCCCCAGTAACTCGACTCCACCACAGGCATCACCGCCGGCGGTGGCTGTGCCTCCACCAAGGTCATCACCACCACCACCATCATCCTCACCACCAGCACCCACCCCTCTTCCTTCTAGGAATAGTCCTCCTGCCACACCAAGTTTTCAACCAGCTCCACCTTCAAATTCTACAGCAAGGCCATCACCTCCATCATCCACAGTCATTCAATCCCCGCCTCCTCCACCTTCACCGCCACCGCAAAACGGATCGGAAAACTCAAGCCCTGGAGCTGGAGGCAGTAGTAGTGGAATTGGCTCTAGTGGTATAGTGGCTATTGGTGTAGCGGCTGGAATTTTGTTGCTTGGCTTCATTGGAATTGCTATATGGTGCATGAGGAGGCAAAAGAAAAAGGAGCCTCTCAATCCTGGTTATGTCATGCCATCCAATTTTCCCTCCTCTACTGAATCAGATTCATCCTATTTGAAGACACAGTCCTCAGCTCCTTTGATAAGAAGTGGCTCTGGTAGTGATGTTGTGTATACACCATCACTAGGCCACTCAAGGAACTGGTTTTCATATGAAGAACTAATCAAGGCTACAAATGGTTTCTCAACTGAAAATCTTTTGGGTGAGGGTGGATTTGGTTCTGTATATAAAGGATGCCTACCTGATGGGAGAGAGATAGCAGTCAAACAGCTGAAGATTGGTGGAGGCCAAGGGGAGAGAGAATTCAAAGCTGAAGTGGAAATTATTAGTCGCATACATCATCGCCATTTGGTTTCTTTAGTTGGATACTGCATTCAAGATAACAGAAGACTACTTGTCTATGAATATGTCCCTAACAATACCCTTTATTTTCATCTACATGGGGAAGGTCAGCCTGTGCTAGAATGGGCAAACCGAGTTAAAATCGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGGGATATCAAGCCATCAAACATTCTTTTGGATTACAACTATGAAGCTCGAGTCGCAGATTTTGGGCTAGCCAAATTAGCTCTTGATGCATATACATATATTACCACACGTGTCATGGGAACTTTTGGGTATGTTGCACCTGAATATGCATCAAGTGGCAAATTGACTGAGAAATCTGATGTATATTCTTTTGGAGTTGTGCTTTTGGAGCTCATTACTGGACGGAAGCCAGTAGATGTATCCCAACCCATGGGAGATGAGAGTCTTGTTGAATGGGCTCGACCTTTGCTGAGTCACGCACTTGAAACTGAGGAATTTGAAAGTTTGGTAGATCCAAGGCTAGAAAAGAACTATGTTGAAAGTGAAATGTTTAGCATGATTGAAGTTGCTGCTGCATGTGTGCGGCATTCAGCTGCAAAGAGACCTCGCATGGGACAGGTTGTTAGATCTTTTGATAGCTTAGCAGCTTCAGATCTAACAAACGGAATGCGAGTTGGGGAAAGCCAGGCGTTTGACTCAGCACAGCAATCTGAAGAAATAAGATTGTTCCGGAGGATGGCATTTGGTAGCCAAAATTATAGCACTGAATTTTTTAGCCAGGCTAATTTGAATACATGA 2124 0.5024 MSAASPSPASSTAAPPPQTPSSNTSPPPSSAATPPPQQPSSPAPNSSVSPPPQTPPPPPATPPAPPPAPPLSPPPSQPPPASPPLTPPTASPPTPTSRPPPPPQPPPPLFPARPSPPPQSPIPPRSSPPPTPPPRSAPPPSNPPNNPSPPPASPPRENSPPPSATVPPPRASPPPPPPQSSVPPPSNSTPPQASPPAVAVPPPRSSPPPPSSSPPAPTPLPSRNSPPATPSFQPAPPSNSTARPSPPSSTVIQSPPPPPSPPPQNGSENSSPGAGGSSSGIGSSGIVAIGVAAGILLLGFIGIAIWCMRRQKKKEPLNPGYVMPSNFPSSTESDSSYLKTQSSAPLIRSGSGSDVVYTPSLGHSRNWFSYEELIKATNGFSTENLLGEGGFGSVYKGCLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIQDNRRLLVYEYVPNNTLYFHLHGEGQPVLEWANRVKIAAGAARGIAYLHEDCNPRIIHRDIKPSNILLDYNYEARVADFGLAKLALDAYTYITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDVSQPMGDESLVEWARPLLSHALETEEFESLVDPRLEKNYVESEMFSMIEVAAACVRHSAAKRPRMGQVVRSFDSLAASDLTNGMRVGESQAFDSAQQSEEIRLFRRMAFGSQNYSTEFFSQANLNT* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00579 707 FunFam Proline-rich receptor-like protein kinase PERK8 353 455 - -
Rops1g00579 707 SMART serkin_6 380 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00579 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Rops1g00579 707 MobiDBLite consensus disorder prediction 10 266 - -
Rops1g00579 707 ProSiteProfiles Protein kinase domain profile. 380 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00579 707 ProSitePatterns Protein kinases ATP-binding region signature. 386 408 IPR017441 GO:0005524
Rops1g00579 707 PRINTS Proline rich extensin signature 6 27 - -
Rops1g00579 707 PRINTS Proline rich extensin signature 28 44 - -
Rops1g00579 707 PRINTS Proline rich extensin signature 58 83 - -
Rops1g00579 707 SUPERFAMILY Protein kinase-like (PK-like) 355 651 IPR011009 -
Rops1g00579 707 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 293 688 IPR047117 -
Rops1g00579 707 Gene3D Phosphorylase Kinase; domain 1 351 455 - -
Rops1g00579 707 FunFam proline-rich receptor-like protein kinase PERK8 456 667 - -
Rops1g00579 707 MobiDBLite consensus disorder prediction 1 280 - -
Rops1g00579 707 CDD STKc_IRAK 386 656 - -
Rops1g00579 707 Pfam Protein kinase domain 381 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00579 707 Gene3D Transferase(Phosphotransferase) domain 1 456 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00579 Rops-Chr1 14497469 14503041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00579 253 704 Trihelix Transcription Factor Family AT5G38560 63.636 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Rops1g00579 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00579 - - vun:114173712 743.806