Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00572 ATGGTGGATTTGAGTAGGAGAAGAATGAGGGGTGAAAGGAGGAAAAAGTTGCGTTTTAGCAAGATCTACTCATTCGCATGTGGCAAAGAATCATTCAAAGGCGATCATTCACAGATTGGAGGGCGTGGCTATTCCAGGGTGGTGTTTTGCAATGAACCAGAGCACTTTGAAGTAGGGATTAGGAATTATGCAGATAATTCTGTGAGGTCAACAAAGTATACTCTTGCTACTTTCTTGCCAAAATCATTGTTTGAGCAGTTTAGGAGAGTGGCTAATTTCTATTTTTTGGTGACTGGAATCTTGGCCTTCACAGAGCTTGCTCCTTATACAGCTGTCACTGCTATCCTTCCTCTGACTATAATTATTGGATTAACTATGGTCAAAGAGGGTATTGAAGATTGGCGTCGGAAAAAACAGGATACTGAGGTGAACAATAGAAGAGTTAAAGTGCATAAAGGGCATGGAACTTTCGAATATACTGAGTGGAAGAATCTGAAGGTGGGGCATATAGTAAAGATAATGAAGGGTGAATTTTTCCCTGCAGACCTCTTACTTCTTTCATCCAGCTATGAGGACGCAGTCTGCTATGTTGAGACCATGAACTTGGATGGGGAGACAAATTTGAAGTTAAAACAAGGGTTGGAGGTGACTTCTTCCTTACATGAGGATTTTGAGTTCAGTGATTTTAAAGCTACAATCAAATGTGAAGACCCAAATGCAAATTTATATTCATTTGTTGGGAGCATGGAGTTTGAAGAGCAACAATATCCCCTTTCTCCTCAGCAACTTCTTTTGAGAGACTCTAAACTTCGCAATACAGACTACATATTTGGAGCTGTCGTCTTCACTGGTCATGACACAAAGGTTATTCAAAATTCTACTGATCCCCCTTCAAAGAGAAGCAAAGTTGAGAAGAAGATGGATCGAATTATCTACTTCTTGTTTTGTATTTTATTTCTATTAGCATTTGTTGGATCTATTTTCTTTGGCATTACAACTAAAGATGACTTGGACAATGGGGTGATGAAAAGATGGTATTTAAGACCTGATGATTCTACAATTTTCTTTGATCCTAAAAGAGCACCTGCTGCTGCTATATTTCATTGTTTGACAGCCTTAATGTTATATGGCTTCTTCATTCCCATCTCACTCTATGTATCAATAGAAATTGTCAAAGTCCTTCAAAGCATCTTCATCAATCAAGATATCCATATGTACTATGAAGAAGCTGACAAACCAGCCCATGCCTGTACTTCAAACTTGAACGAGGAACTTGGCCAAGTTGACACAATACTTTCTGATAAAACTGGAACTCTGACCTGCAACTCAATGGAATTCATCAAATGTTCCATTGCTGGGGTAGCTTATGGCAGTGGTATTACAGAGGTTGAGAGGGCCATGGATAGAAGAAATGGTTCTCCTTTGATTAGTGACATCGGGGAATCTCCTGATAGAAATACTCCCATCAAAGGTTTTAATTTCACAGATGAAAAGATAATGAATGGAAACTGGGTTAATGAGCCTTATGCAGATGTTATCCAGAATTTTTTTCGCATATTGGCAATCTGTCATACAGCCATACCAGAAGTGGATGAAGAAACAGGAAATATCTCATATGAGGCCGAGTCTCCAGATGAAGCAGCATTTGTGATTGCAGCAAGAGAAGTTGGTTTTGAATTCTATAAAAGGACTCAGACTAGTTTATCAAAGTATGAATTGGATCCAGTTTCTGGTGACAAAGTTGAAAGGGTGTACAAACTTCTCAATGTTTTAGAATTCAATAGCTCAAGGAAGCGAATGTCAGTGATAGTGAAAGATGAAGAAGGGAGAATTTTGCTGCTTTGTAAAGGTGCTGACAGCGTCATGTTTGAAAGGCTTGCCAAGGATGGGAGGGAGTTCGAAGAGAAAACCTCGGAACATGTGCATGAATATGCTGATGCAGGCCTAAGAACCCTGATACTGGCGTATCGTGAACTTGATGAAGAACAATACAAGGAGTTTGATAATAAATTTTCTAAAGCAAGAAATTCAGTTACTGAAGATCGGGACGCACTGATAGAGGAAGTATCAGATAAGATTGAGATGAATCTAATCCTTCTTGGTGCCACTGCTGTAGAGGACAAGCTCCAAAATGGGGTTCCTGATTGCATTGACAAGCTTGCCCAAGCTGGAATCAAGATCTGGGTTTTGACGGGGGATAAAATGGAGACTGCCATCAATATTGGTTTTGCTTGTAGTTTGCTTAGACAAGGAATGAAGCAGCTTATAATTCAATTGGAGACTCCAGAAATTCAAGCATTAGAGAAGGCTGGAGACAAGAAGGCTATTGCCAAGGCTTCAAGGGAAAGTGTCCGCAATCAGATATCTGAAGGTGCTCAACAGCTTAGTGCCTCCAGAGGAACCTCTCAGCAAGCATTTGCTCTAATTATTGATGGAAAATCACTTGCTTATGCTTTAGAGGATAATATGAAGGACTTGTTTCTGGAGCTTGCAATTCGTTGTGCATCTGTTATCTGCTGTCGTTCGTCACCAAAGCAGAAGGCACTGGTCACTAGACTGGTCAAATCTGGAACTGGTAAAACTACATTAGCTATTGGCGATGGAGCTAATGATGTGGGAATGCTTCAAGAAGCAGATATTGGGGTTGGAATCAGTGGTGTTGAAGGAATGCAGGCCGTTATGTCTAGTGATATTGCAATTGCTCAGTTTCGTTACTTGGAAAGATTACTTCTTGTACACGGACATTGGTGTTACCGGAGGATCTCATCAATGATATGCTATTTTTTCTACAAGAATATCACATTTGGCTTCACTCTATTCTTGTATGAGGTGTATGCATCATTCTCTGGACAGCCTGCATACAATGACTGGTTTTTGTCTCTGTATAATGTCTTCTTCTCAACACTTCCCGTGATTGCCCTCGGGGTCTTTGACCAGGATGTATCTGCTAGGTACTGCCTGAAGTTTCCTTTGTTATATCAAGAAGGTGTACAAAATGTCCTCTTTAGCTGGCGTCGAATACTCAGCTGGATGCTTAATGGATTTATTAGTGCCATAATAATTTTCTTCTTCTGCACAAAGGCAATGGAGATTCAGGCATTTGATGAGGAGGGAAGAACTGCAGGGAGGGATATATTAGGAGCAACAATGTATACATGTGTGGTTTGGGTTGTAAACTTGCAAATGGCACTTGCTATAAGTTACTTCACCTTGATTCAACATATTTTCATCTGGGGATCCATTGCTGTCTGGTATCTTTTCCTCCTGGCATATGGAGCAATACCTCCAAGCTTCTCCACAAATGCCTACAAAGTGTTCATTGAAACTCTTGCTCCAGCTCCTTCCTTTTGGTTTGTGACATTCTTTGTGGTGATCTCAACACTCATACCATACTTCTCTTACTCAGCACTGCAGAGGCAGTTCTTTCCTTTGTATCACGAAATGGTACAATGGATAAGGTACCAGGGGATGACAGATGATCCCGAATTCTGTCATATGGTGCGTCAGGGATCATTGCGGCCAACCACTGTCGGTTCAACAGCTCGCTTAGCAGCTAAGACTAACTCCATCAGAGAGAACTCCACTAACCATAGATAA 3597 0.407 MVDLSRRRMRGERRKKLRFSKIYSFACGKESFKGDHSQIGGRGYSRVVFCNEPEHFEVGIRNYADNSVRSTKYTLATFLPKSLFEQFRRVANFYFLVTGILAFTELAPYTAVTAILPLTIIIGLTMVKEGIEDWRRKKQDTEVNNRRVKVHKGHGTFEYTEWKNLKVGHIVKIMKGEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLEVTSSLHEDFEFSDFKATIKCEDPNANLYSFVGSMEFEEQQYPLSPQQLLLRDSKLRNTDYIFGAVVFTGHDTKVIQNSTDPPSKRSKVEKKMDRIIYFLFCILFLLAFVGSIFFGITTKDDLDNGVMKRWYLRPDDSTIFFDPKRAPAAAIFHCLTALMLYGFFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHACTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGSGITEVERAMDRRNGSPLISDIGESPDRNTPIKGFNFTDEKIMNGNWVNEPYADVIQNFFRILAICHTAIPEVDEETGNISYEAESPDEAAFVIAAREVGFEFYKRTQTSLSKYELDPVSGDKVERVYKLLNVLEFNSSRKRMSVIVKDEEGRILLLCKGADSVMFERLAKDGREFEEKTSEHVHEYADAGLRTLILAYRELDEEQYKEFDNKFSKARNSVTEDRDALIEEVSDKIEMNLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQLIIQLETPEIQALEKAGDKKAIAKASRESVRNQISEGAQQLSASRGTSQQAFALIIDGKSLAYALEDNMKDLFLELAIRCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYNVFFSTLPVIALGVFDQDVSARYCLKFPLLYQEGVQNVLFSWRRILSWMLNGFISAIIIFFFCTKAMEIQAFDEEGRTAGRDILGATMYTCVVWVVNLQMALAISYFTLIQHIFIWGSIAVWYLFLLAYGAIPPSFSTNAYKVFIETLAPAPSFWFVTFFVVISTLIPYFSYSALQRQFFPLYHEMVQWIRYQGMTDDPEFCHMVRQGSLRPTTVGSTARLAAKTNSIRENSTNHR* 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00572 1198 Pfam Cation transport ATPase (P-type) 537 626 - -
Rops1g00572 1198 Gene3D - 696 905 IPR023214 -
Rops1g00572 1198 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 35 1154 - -
Rops1g00572 1198 NCBIfam phospholipid-translocating P-type ATPase 63 1150 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Rops1g00572 1198 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 499 662 IPR023299 GO:0000166
Rops1g00572 1198 Pfam Phospholipid-translocating ATPase N-terminal 48 115 IPR032631 -
Rops1g00572 1198 SFLD p-type atpase 416 916 IPR044492 -
Rops1g00572 1198 FunFam Phospholipid-transporting ATPase 124 294 - -
Rops1g00572 1198 CDD P-type_ATPase_APLT_Dnf-like 65 1014 - -
Rops1g00572 1198 Gene3D - 125 294 - -
Rops1g00572 1198 Gene3D - 545 674 IPR023299 GO:0000166
Rops1g00572 1198 FunFam Phospholipid-transporting ATPase 542 700 - -
Rops1g00572 1198 Pfam Phospholipid-translocating P-type ATPase C-terminal 893 1143 IPR032630 -
Rops1g00572 1198 SUPERFAMILY Calcium ATPase, transmembrane domain M 61 1143 IPR023298 -
Rops1g00572 1198 ProSitePatterns E1-E2 ATPases phosphorylation site. 434 440 IPR018303 -
Rops1g00572 1198 SUPERFAMILY HAD-like 427 920 IPR036412 -
Rops1g00572 1198 FunFam Phospholipid-transporting ATPase 700 905 - -
Rops1g00572 1198 SUPERFAMILY Calcium ATPase, transduction domain A 149 291 IPR008250 -
Rops1g00572 1198 SFLD Haloacid Dehalogenase 416 916 - -
Rops1g00572 1198 PRINTS P-type cation-transporting ATPase superfamily signature 432 446 - -
Rops1g00572 1198 PRINTS P-type cation-transporting ATPase superfamily signature 865 884 - -
Rops1g00572 1198 NCBIfam HAD-IC family P-type ATPase 836 947 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00572 Rops-Chr1 14396270 14405087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00572 17 1191 Primary Pumps ATPases AT1G68710 74.484 0.0 1908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00572 K01530 - gmx:100785037 2146.7