Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00558 ATGGATCGAGAATGGGGCTCGAAGCCGGGGAGCGGTGGCGCCGCCACCGCACAGAACGAAGCTATCGACCGCCGGGAGCGTCTCCGGCGATTGGCCCTTGAGACCATTGATCTTGCCAAAGATCCCTATTTCATGCGCAATCATCTTGGAAGCTATGAATGCAAGCTTTGCCTCACTCTTCACAATAACGAGGGGAACTACTTGGCCCACACACAGGGGAAGCGCCATCAAACCAATTTGGCAAAGCGAGCAGCTCGTGAGGCCAAAGATGCACCTGCTCAACCTCAACCTCACAAGCGCAAAGTCTCTGTTCGCAAAACAGTCAAGATTGGTCGGCCTGGGTACCGGGTGACTAAGCAATATGATCCAGAGACAAAGCAAAGATCTCTTTTGTTCCAGATTGAATATCCTGAGATTGAAGACCTCATGAAGCCAAGGCACCGATTTATGTCTTCTTATGAGCAGAGGGTGCAACCATTTGATAAAAGATATCAATATCTTTTGTTTGCAGCTGAACCATATGAAATAATTGCTTTCAAGGTACCTAGCACAGAGATTGATAAGTCCACTCCAAAGTTTTTCTCGCACTGGGACCCTGACTCAAAGATGTTCACACTGCAATTGTATTTTAAAACTAAGCCACCAGAGGCACCAAAACCACCACCTGCCACTACAGCCAATGGCACATCAGCACCTGGGGTTCCACCAAGGCCTTTGCCCCCACCACCCCAAGCTCCACCGCCGCCGCCACCTCCTCCACAAGGGCTACCTCCCGGTGCACCTTTAGGAAATCCTCCCAGAGCTTTGCCTCCTCCATTACCAGGATCATTGCCGCCGCCACCTCCTATGGCAGTAAATGGTCCTAGACCAGCACCTCCTCCTGGTGGAATGCCATCTATCCCACCACCACCTCCTGTTGGCAGTGGCACAGCAAATTTCAACATGGGTTCAAGGCCTCCATTTATGCCACCTCCACAAGGTCCTTAG 987 0.5137 MDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLMKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEAPKPPPATTANGTSAPGVPPRPLPPPPQAPPPPPPPPQGLPPGAPLGNPPRALPPPLPGSLPPPPPMAVNGPRPAPPPGGMPSIPPPPPVGSGTANFNMGSRPPFMPPPQGP* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00558 328 Pfam Zinc-finger of C2H2 type 52 76 - -
Rops1g00558 328 SMART CactinC_cactus_3 89 217 - -
Rops1g00558 328 MobiDBLite consensus disorder prediction 233 308 - -
Rops1g00558 328 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Rops1g00558 328 MobiDBLite consensus disorder prediction 212 328 - -
Rops1g00558 328 FunFam Splicing factor 3a subunit 2 94 218 - -
Rops1g00558 328 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Rops1g00558 328 MobiDBLite consensus disorder prediction 1 21 - -
Rops1g00558 328 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Rops1g00558 328 Gene3D - 93 217 - -
Rops1g00558 328 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Rops1g00558 328 Gene3D Classic Zinc Finger 46 89 - -
Rops1g00558 328 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 318 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00558 1 228 C2H2 Transcription Factor Family AT2G32600 89.035 6.26e-143 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00558 K12826 - gmx:100818114 446.047