Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00556 ATGATGCTCCCTCAGCAAGAAACCACTATCACACCAAACATTCCGGCCATCCCAAACCGACCGGAGAACAGCTCCGTCCATGCCGAACCACCAAGCTCCTCCTCCACTAACCACACCAAACCCAATTTGGATAACCACATTCCTTCTCAACACCAGCACCCAGCACCATCACCAAGACTTTCCATTCTTCACCAATCCCTTCGTCCCGTTACCCTCAAATTTGAAGATGTTTGTTACAGCATAACCATTGGAAACCAGAAGAATGGTTGTATTTGTGAAATTTCTTCACGAGAGCCAAAGCTAAATCGTGCAGTTCTAAACGGTGTGACTGGGATAGTGAACCCTGGTGAGGTGATGGCAATGTTGGGTCCTTCAGGTAGCGGCAAAACCACCTTACTCACCGCCCTCGCCGGCCGTCTCACCGGAAAAATCTCCGGCAACATCACTTACAATGGCCACCATTTCTCCGGCACCACGAGGCGCAACACCGGTTTTGTGTCACAAGATGACGTGTTATACCCTCACCTCACGGTGGTTGAGACCCTCACCTATGCTGCTCTACTAAAACTGCCGCAAAGTTTGACAAGGGAGGAAAAGAAGGCACAAGTTGACGTGATCATAAATGAATTAGGGTTGTCGAGGTGCCGGAATAGTCCCATTGGTGGTGTCGCAGCCTTGTTCCGGGGAATTTCCGGTGGGGAGAGGAAGCGGGTTAGTATTGGGCAGGAGATGTTGGTTAATCCGAGTTTGTTGTTGTTGGATGAGCCGACATCCGGCCTCGATGCCACCACGGCCCAGCGCATCGTGGCGGTGCTTAAGAGCGTCGCCGGCGGTGGCCGGACCGTGGTGACTACCATTCACCAGCCTTCCAGCCGGTTGTATAGGATGTTTGATAAGGTGGTCGTGCTGTCGGATGGGTACCCCATTTATAGTGGGCAAGCGGGTCGGGTCATGGATTATCTTGAGTCCGTTAGATTTGTGCCAGCTTTCAATTTCATGAACCCAGCTGATTTTCTGCTTGACCTCGCTAACGGCATAATTGCTGATGTCAAACCGAATGATAAGATAGATCACATTGAAGATCAAGCTTCAATCAAACAGTCCCTAGTTTCATCCTATAAGAAGAATTTATACCCTCTTCTCAAAGAAGAGATTCAGAGGAATAATAGAGAGTCAACATTTTTTACTACAGGAACACACAGAAGTTCTGAGAACCAATGGACCACTAGCTGGTGGGAGCAATTCAAGGTTCTGCTTAAGAGGGGTTTAAAGGAGAGGAGGCATGAATCTTATTCTGGCTTAAGGATTTTCCAAGTCTTGTCTGTTTCAATTCTCTCAGGACTTCTGTGGTGGCATTCTGATCCCTCACATATACAAGATCAGGTAGGCCTGCTTTTCTTCTTCTCCATCTTCTGGGGATTCTTCCCTCTCTTTAATGCCATCTTTGCATTTCCTCTGGACCGGCCATTGCTGATAAAAGAAAGATCATCAGGCATGTATCATCTCTCCTCCTACTACATTTCAAGGATGGTTGGAGACTTACCAATGGAGCTTGTTCTTCCTACCATCTATGTAACCATCACCTACTGGATGGGTGGTCTCAAGCCTTCACTAGTTACATTTGTGTTAACCCTCTTGATCATGCTTTTCAATGTGTTAGTCTCTCAAGGAATAGGCCTAGCACTTGGGGCCATTCTAATGGATGTTAAACATGCCACAACTCTAGCTTCAGTGACCATGCTGGTGTTTCTTTTAGCTGGTGGTTACTACATTCAGCAAATGCCATCTTTTGTAGCTTGGTTGAAGTATATTTCTTTCAGTCACTACTGCTATAAGCTTCTTGTAGGAGTGCAGTACTCAGTAAATGAGGTTTATGAGTGTGGACCAGGGTTACAATGTAGGGTAAGAGATTTTCCTGCCATAAAGTGTCTTGGGCTTGATAATATGTGGGGTGATGTGGCTGTATTGACTGTAATGTTGATAGGATACAGAGTTGTGGCATATCTTGCTTTGAGGATGGGGCTGCATTATTGA 2034 0.4666 MMLPQQETTITPNIPAIPNRPENSSVHAEPPSSSSTNHTKPNLDNHIPSQHQHPAPSPRLSILHQSLRPVTLKFEDVCYSITIGNQKNGCICEISSREPKLNRAVLNGVTGIVNPGEVMAMLGPSGSGKTTLLTALAGRLTGKISGNITYNGHHFSGTTRRNTGFVSQDDVLYPHLTVVETLTYAALLKLPQSLTREEKKAQVDVIINELGLSRCRNSPIGGVAALFRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDATTAQRIVAVLKSVAGGGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGQAGRVMDYLESVRFVPAFNFMNPADFLLDLANGIIADVKPNDKIDHIEDQASIKQSLVSSYKKNLYPLLKEEIQRNNRESTFFTTGTHRSSENQWTTSWWEQFKVLLKRGLKERRHESYSGLRIFQVLSVSILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLDRPLLIKERSSGMYHLSSYYISRMVGDLPMELVLPTIYVTITYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKHATTLASVTMLVFLLAGGYYIQQMPSFVAWLKYISFSHYCYKLLVGVQYSVNEVYECGPGLQCRVRDFPAIKCLGLDNMWGDVAVLTVMLIGYRVVAYLALRMGLHY* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00556 677 MobiDBLite consensus disorder prediction 1 58 - -
Rops1g00556 677 FunFam ABC transporter G family member 22 93 324 - -
Rops1g00556 677 Gene3D - 93 325 IPR027417 -
Rops1g00556 677 Pfam ABC-2 type transporter 413 619 IPR013525 GO:0016020|GO:0140359
Rops1g00556 677 ProSitePatterns ABC transporters family signature. 230 244 IPR017871 GO:0005524|GO:0016887
Rops1g00556 677 Pfam ABC-2 type transporter 287 349 IPR043926 GO:0140359
Rops1g00556 677 Pfam ABC transporter 106 258 IPR003439 GO:0005524
Rops1g00556 677 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 38 668 - -
Rops1g00556 677 SMART AAA_5 115 308 IPR003593 GO:0016887
Rops1g00556 677 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 72 330 IPR003439 GO:0005524
Rops1g00556 677 MobiDBLite consensus disorder prediction 1 56 - -
Rops1g00556 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 322 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00556 Rops-Chr1 14038802 14044137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00556 105 306 Calmodulin-binding Proteins AT2G36910 29.412 4.28e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00556 K05681 - gmx:100810165 1075.46