Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00555 ATGCCTCAAAGATGCTCCACCGTCATGGTTTTAGATAGAAAAATGATAGAAGTCGATGGAGTGCGTCCTCGGAAGAAGCCTAAGGTTACGGTGGTGGAAGCGGCGGCGAAGATTTACACGGCTGATCTGGAAGCTAATATATCGGAGGAAACTTTGTTCATGGTGCAAATGTCCATAGATACAGTTATAGATGATGGTGTTGATGTTCTTTCCATTTCTCTTGGAGGGTCTCCTATGGATTACTATCGTGATGTTCTTGCTATTGGAACATTTCATGCTGTTAAGAATGGTATCACTGTAGTATGTGCTGCTGGAAATTCTGGACCACAACCTGGAAGTGTATCAAATTCTGCACCTTGGATACTTACAGTTGGTGCAAGTACCTTGGACAGAAAGTTTGAAGCTGTTGTTGAACTCCCCAATGGACAACGCTTTGAGGGATATACTCTTTCTAATGGTGTCCCAGAAGACAAACTTTATCCACTCATTAAGAAGGTAAAGGGCAAAATAGTGCTTTGTCTTAGAGATGGAACAGAATTGAAGGTAGATGTGCCTGTTGCTTTCAAAGGGGAAGATGTTTGTCGTGGTATTCATAAAGGGGGATTTTTGAATAAGATCAGAACTAGTCTAAACTACCTTTGTCCATCGGAACATATTCCTTCAAAAATTGAGGTGGATGTAAGCAATCTAGATATTGAGGTTCATCCATCCTTGAAGCTTCTAAGCAAGAATGAAAACATGCCCATATGTAAAATAGTTTCAACAAGTTTGGGAAATGAAGCACCTATTGCTGAATGA 798 0.406 MPQRCSTVMVLDRKMIEVDGVRPRKKPKVTVVEAAAKIYTADLEANISEETLFMVQMSIDTVIDDGVDVLSISLGGSPMDYYRDVLAIGTFHAVKNGITVVCAAGNSGPQPGSVSNSAPWILTVGASTLDRKFEAVVELPNGQRFEGYTLSNGVPEDKLYPLIKKVKGKIVLCLRDGTELKVDVPVAFKGEDVCRGIHKGGFLNKIRTSLNYLCPSEHIPSKIEVDVSNLDIEVHPSLKLLSKNENMPICKIVSTSLGNEAPIAE* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00555 265 ProSiteProfiles Serine proteases, subtilase domain profile. 1 265 - -
Rops1g00555 265 FunFam Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein 177 255 - -
Rops1g00555 265 Gene3D Ribosomal protein L25, beta domain 178 253 IPR037121 -
Rops1g00555 265 Gene3D Peptidase S8/S53 domain 55 129 IPR036852 GO:0004252|GO:0006508
Rops1g00555 265 Gene3D - 130 165 - -
Rops1g00555 265 Pfam Subtilase family 26 155 IPR000209 GO:0006508|GO:0008236
Rops1g00555 265 SUPERFAMILY Subtilisin-like 51 153 IPR036852 GO:0004252|GO:0006508
Rops1g00555 265 Pfam Ribosomal protein TL5, C-terminal domain 180 246 IPR020057 -
Rops1g00555 265 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 58 193 IPR045051 -
Rops1g00555 265 SUPERFAMILY Ribosomal protein L25-like 172 256 IPR011035 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00555 Rops-Chr1 13976130 13980641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00555 58 183 Subtilisin-like Serine Gene Family AT5G59810 52.980 1.19e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00555 - - rcu:8283864 164.466