Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00544 ATGAAGATGTTCTCTAGTCTTCTCTCACCAAAAGAAGTGGACCCATTATCCTCAAGCTTGGGTTGGCATGTTTCTCATGTCTCTCTAGGAGCCTTAAGAGAATGGGGTGATAAAGCTCCTAAGCCTCGACCACAAAGGGAACGTAGGAAGACATTCATGTGGCTGAGGATTTGCTTCCGCTTGTTGGCCCTTCAAACGACAAGGGCATGCAAACTCCACGTAAGGGAGCTCGAGTGCACTAGCCAAGGGTGCATGGGGTTGCATCTGCGCATGAAGCACATGACAAGACAAGAATTTGTGGCTGCTATCAGAAGGAAGAGCAGTGGTTTCTCGAGGGGTGCATCAATGTATCGCGGAGTCACAAGGCATCACCTACATGGGAGATGGCAAGCAAGGATTGGAAGAGTAGCAGGAAACAAAGATCTTTACTTAGGAGCATTCAGCACTGAGGAAGAGGCTGCAGAAGCATACGACATAGCTGCGATTAAATTTAGAGGTCTCAACGCTGTGACTAACTTTGAAATGAGTCGTTATGATGTTAAAGCCATTCTTGAAAGCAACACTCTCCCAATAGGAGGAGGTGCTGCTAAACGACTGAAAGAAGCTCAAGCTCTAGAGTCTTCAAGAAAACAACGGGAGGAGATGATTGCACTAGGCTCAAGCTTTCAATATGGAACCTCCTCAAGTTCTAGCAGGCTACAACCACAAGCTTACCCTCTAATGCACCAGCAGCATCAAACTCAACCTTTTCTAACTTTACAAAACAATGACATCTCTCAGTTTTCTCAAGACCCTTTGTCTTCTTCACGGCATCATCATCATCAGAGTTATATCCAAACACAGCTTCAATTGCACCAAGGCGGCTGGGCGGCAGCGGAGTCCATGCACACGTCAAATGCTGCTGGTTTGTTTACAACGTGGAATGGAACACGATGCACTTAA 942 0.465 MKMFSSLLSPKEVDPLSSSLGWHVSHVSLGALREWGDKAPKPRPQRERRKTFMWLRICFRLLALQTTRACKLHVRELECTSQGCMGLHLRMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHLHGRWQARIGRVAGNKDLYLGAFSTEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKQREEMIALGSSFQYGTSSSSSRLQPQAYPLMHQQHQTQPFLTLQNNDISQFSQDPLSSSRHHHHQSYIQTQLQLHQGGWAAAESMHTSNAAGLFTTWNGTRCT* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00544 313 SMART rav1_2 116 180 IPR001471 GO:0003700|GO:0006355
Rops1g00544 313 Gene3D AP2/ERF domain 116 176 IPR036955 GO:0003700|GO:0006355
Rops1g00544 313 CDD AP2 115 176 IPR001471 GO:0003700|GO:0006355
Rops1g00544 313 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 90 259 - -
Rops1g00544 313 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Rops1g00544 313 FunFam AP2-like ethylene-responsive transcription factor 115 176 - -
Rops1g00544 313 ProSiteProfiles AP2/ERF domain profile. 116 174 IPR001471 GO:0003700|GO:0006355
Rops1g00544 313 SUPERFAMILY DNA-binding domain 115 176 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00544 Rops-Chr1 13631375 13632440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00544 91 286 AP2-EREBP Transcription Factor Family AT3G20840 79.703 1.21e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops1g00544 AP2 6.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00544 K09285 - gmx:100788471 303.138