Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00503 ATGGCTGGACCATCGTGGTTGGTGGACAAAAGTAGAATTGCAACCAAGATAAAAAGCGCTTCTGGAGCATGTGATCCTGAAAAAGTTGTATGGAAAAGCAATCCTTCCAAGGCTTGCCCAAATTGTCAGCATGCTATTGATAACAGTGATGTAACACAAGATTGGCCTGGCTTACCAAAGGGTGTCAAATTTGATCCATCTGATCAGGAGATAATTTGGCACTTGCTTGCGAAAGTTGGTGTAGGAAATTCAAATCCCCATCCTTTCATTGATGAGTTTATTACTACTCTTGAAGTGGATGATGGAATTTGTTATACTCATCCACAAAATTTACCTGGTGTTAAGCAAGACGGACATGCTTCCCACTTCTTCCACAGGGCTATTAAGGCTTATAATACTGGCACTCGAAAGCGCCGAAAAATACATGGTCAGGATTTTGGTGATGTCCGCTGGCATAAGACTGGAAAGACTAAACCACTAATATTGAATGGGGTTCAAAAAGGCTGTAAAAAGATTATGGTTCTTTATATGAGCAATGTAAGAGGAGGAAAAGCAGAGAAAACTAATTGGGTTATGCATCAATATCACCTAGGAACAGAAGAGGATGAAAAGGATGGGGAGTATGTTATCTCTAAAGTGTTTTACCAGCAGCAGCAAGTCAGATTGAGTGATAAAGATGACCTGGATATTCCTGAAGCCACTGAAGCAACAATTGTGAAAGTGGATCCAGTCACTCCCAAATCTGTGACTCCTGAGCCTCCTTGTAATGAAAGGCAGCATTCAAGTCTGGACCCAGGACAAGAAACCCATACCATTCCTCAGCCTCCTCAGATGGATTGTCTGGATGAAATTCAAGCTGATTGCGAAGAGCTTGCAAAAACTGATCTCTCCATGGTAGAAAGTCAACAAAATGAAGGCATGGATAATAAAGAAAATAATGCTGATGAAGGTATGGATAATCAAGAAAATAATGCCGATGAAGGCCAAAAATGGTGGGATAGTGAGTCACAGAATCTGTTGGATTCACAACAACTGGTGGAAGCATTGTCCTTGTGTGATGATCTACTTCAAAGCCAGTCTCCCAATAGAGATGTAAAATATGGAGAACATAAGAACCAACCCGGTCTTTCTGTTTATGCTCAGCTAGGACCAGAGCATCTGAAGAAGGATATTGAAGAGTGTCAAAATCTTGTCCTTGACCCTGCAAATATAGAGCATGATACACCTTCAGAGTTTCGACTAAGTCAGCTGGAATTTGGTTCACAGGATAGCTTTATTTCCTGGGGTTACAGCAAGACAGTAAATTAA 1308 0.4106 MAGPSWLVDKSRIATKIKSASGACDPEKVVWKSNPSKACPNCQHAIDNSDVTQDWPGLPKGVKFDPSDQEIIWHLLAKVGVGNSNPHPFIDEFITTLEVDDGICYTHPQNLPGVKQDGHASHFFHRAIKAYNTGTRKRRKIHGQDFGDVRWHKTGKTKPLILNGVQKGCKKIMVLYMSNVRGGKAEKTNWVMHQYHLGTEEDEKDGEYVISKVFYQQQQVRLSDKDDLDIPEATEATIVKVDPVTPKSVTPEPPCNERQHSSLDPGQETHTIPQPPQMDCLDEIQADCEELAKTDLSMVESQQNEGMDNKENNADEGMDNQENNADEGQKWWDSESQNLLDSQQLVEALSLCDDLLQSQSPNRDVKYGEHKNQPGLSVYAQLGPEHLKKDIEECQNLVLDPANIEHDTPSEFRLSQLEFGSQDSFISWGYSKTVN* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00503 435 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Rops1g00503 435 FunFam NAC domain-containing protein 8 67 220 - -
Rops1g00503 435 MobiDBLite consensus disorder prediction 242 278 - -
Rops1g00503 435 MobiDBLite consensus disorder prediction 299 326 - -
Rops1g00503 435 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Rops1g00503 435 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Rops1g00503 435 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 395 IPR044799 GO:0003700
Rops1g00503 435 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Rops1g00503 435 MobiDBLite consensus disorder prediction 252 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00503 Rops-Chr1 13231676 13237449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00503 14 218 NAC Transcription Factor Family AT1G28470 53.738 3.59e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops1g00503 NAM 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00503 - - gmx:100803236 748.429