Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00499 ATGGAAGGAGGTAGTTGCATAGACGAAAGCACCACCACCGAGTCTCTATCTATAACCTTATCCCCGGCGAATAAACTGTCATCGCCGCCACCACCAAACAGTCTCTGCCGTGTCGGCAGCGGCGCGAGCGCGATTGTCGACCCCGACGGCGGCGGTGCCGGAGAAGCCGAATCACGGAAGCTTCCGTCGTCGAAGTACAAAGGCGTGGTGCCACAGCCAAACGGGCGTTGGGGAGCGCAGATTTACGAAAAGCACCAGCGCGTGTGGCTCGGAACTTTCAACGAAGAAGATGAAGCCGCCAGAGCCTACGACATCGCCGCGCAACGGTTCCGCGGCAAAGACGCCGTAACTAACTTCAAACCCACCGCCGGCGCCGACGATGATGACGTGGAGGCGGAGTTCCTCAACTCGCATTCGAAATCCGAGATCGTCGACATGCTGAGGAAACACACGTACAATGACGAACTGGAACAAAGCAAGCGCAGCCGTGGCTTCATCGGCCGGCGTCGAAACGGCTCAGTCAACTCACTCACCGGCGCGTTTGAAAAGAAGGCGCGTGAGCCCCTCTTTGAGAAGGCCGTTACGCCGAGCGACGTTGGGAAGTTGAATCGGTTAGTTATACCGAAACAGCACGCGGAGAAGTATTTTCCGTTACAGAGTGTCGTCGGCGTCGGTGGAAGCGCGTCGGCATCGGTGGCGAAGGGATTGTTGTTGAACTTTGAAGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCATATTGGAACAGTAGCCAGAGCTACGTGCTCACCAAAGGTTGGAGCCGGTTCGTTAAGGAGAAGAATTTGAAAGCCGGAGACACGGTTTGTTTCCACCGGTCTACTGGACCGGACAAGCAGCTCTATATTGATTGGAAAGCAAGAATGAATGTTAATGAGGTTGGTTTGTTCAGCCCCATAGGACCGGTTGTGGAACCGGTTCAGATGGTTCGGTTATTTGGTGTGAACATTCTGAAACTACCTGGCTCTGATTCTAATATTGTTGGTTCTTGTAATGGCAAGAGAGAGATGGAAGTGTTCACGTTAGTTTGTAGCAAGAAGCCTAAGATCATTGGAGCTTTGTAA 1104 0.5326 MEGGSCIDESTTTESLSITLSPANKLSSPPPPNSLCRVGSGASAIVDPDGGGAGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPTAGADDDDVEAEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGFIGRRRNGSVNSLTGAFEKKAREPLFEKAVTPSDVGKLNRLVIPKQHAEKYFPLQSVVGVGGSASASVAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARMNVNEVGLFSPIGPVVEPVQMVRLFGVNILKLPGSDSNIVGSCNGKREMEVFTLVCSKKPKIIGAL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00499 367 MobiDBLite consensus disorder prediction 1 69 - -
Rops1g00499 367 Pfam AP2 domain 64 112 IPR001471 GO:0003700|GO:0006355
Rops1g00499 367 FunFam AP2 domain-containing protein RAP2.8 64 121 - -
Rops1g00499 367 Gene3D AP2/ERF domain 64 121 IPR036955 GO:0003700|GO:0006355
Rops1g00499 367 MobiDBLite consensus disorder prediction 1 34 - -
Rops1g00499 367 ProSiteProfiles AP2/ERF domain profile. 65 120 IPR001471 GO:0003700|GO:0006355
Rops1g00499 367 SUPERFAMILY DNA-binding domain 64 120 IPR016177 GO:0003677
Rops1g00499 367 CDD B3_DNA 188 287 IPR003340 GO:0003677
Rops1g00499 367 SUPERFAMILY DNA-binding pseudobarrel domain 187 298 IPR015300 -
Rops1g00499 367 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Rops1g00499 367 Gene3D - 179 308 IPR015300 -
Rops1g00499 367 SMART rav1_2 65 126 IPR001471 GO:0003700|GO:0006355
Rops1g00499 367 SMART B3_2 190 302 IPR003340 GO:0003677
Rops1g00499 367 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 60 339 IPR044800 GO:0003700
Rops1g00499 367 Pfam B3 DNA binding domain 190 298 IPR003340 GO:0003677
Rops1g00499 367 ProSiteProfiles B3 DNA-binding domain profile. 190 301 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00499 Rops-Chr1 13056709 13058085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00499 5 367 B3 DNA Binding Superfamily AT1G25560 60.422 1.17e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Rops1g00499 B3 2.2e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00499 K09287 - gmx:100801107 574.704