Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00494 ATGCATCCTCAGAAGATAGGGTTCCGTGAGTACATAGAAGCTTTGGAGGAAGAAAGGAAAAAAATCCAGGTTTTCCCTAGAGAGCTTCCTCTTTCATTGGAGCTTGTTACACAAGCCATTGAAGCATGTAAGCAGCAGTTGTCTGGAACGATGACAGAGTACAATTTGAATGGCCAATCTGAGTGTTCGGACCAAACATCAACAGAAGAAGGTCCTGTTTTTGAAGAGTTCATTCCTATTAAGAAAAAGGCAACCCCTGATTGTGATGAAGAAGATAATGATGATGATGAGGATGAGGATGAGGATGAACATTCTCATAAGCACAAGAAGAACAACACCGCTGATAAAAAGAAATCAGATTGGCTCCGATCTGTTCAGTTGTGGAATCCTGATCCCCCTCTTGCCAAAGAGGATTTGCCTAGGAAAATAAATGTTGTGGAAGTGAAGAGAAATGGTGGTGCATTTCAACCATTCCACAGAGAGGAAAGTGTTGTTGGAAAGGCTAATAATGCATCTGGTAAAGCACCCTCTTCACCACCAGTTCCTGCTACAAGTTCAACAGGACCAGTTAAAGTAGACAATGTTGGAAGCAGCAAAAGAGAGGATAAAGGACAGGCTCAGAGAAAGCAACGTAGGTGCTGGTCACAGGAATTGCATAAGCGGTTCTTGCATGCCCTCCAGCAGCTTGGTGGTGCAGATTCTGGCACACCAAAACAGATCAGGGAACTAATGAAAGTTGATGGCCTCACCAATGATGAAGTCAAAAGTCATTTGCAGAAATTTCGTCTCCACACCAGAAGAAGCCCTGTGATTCACAACAATGCTAATTCACAAACAGCTCCTTTGTTCCTTGTTGGGAATATTTATGTTCAACCACCAGAATATGCTGCAAGAGCTACCACAACAACAGCATCAGGGGAATTGACCACGGTTACTACTACTCCAACTGGAATTTATGCACCTGTTGCTGCACTTCCACCTGCTGTACAACACACATCAACTCCTGCACTTTCACAGTCAGAAGAAAGGGCTAATAACAGTGAGGGGGCTGTTCACTCAAACTCCCCTGCCTCATCATCCTCCACTCATACTACCACAACTTCACCTGGGTATTGA 1116 0.44 MHPQKIGFREYIEALEEERKKIQVFPRELPLSLELVTQAIEACKQQLSGTMTEYNLNGQSECSDQTSTEEGPVFEEFIPIKKKATPDCDEEDNDDDEDEDEDEHSHKHKKNNTADKKKSDWLRSVQLWNPDPPLAKEDLPRKINVVEVKRNGGAFQPFHREESVVGKANNASGKAPSSPPVPATSSTGPVKVDNVGSSKREDKGQAQRKQRRCWSQELHKRFLHALQQLGGADSGTPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPVIHNNANSQTAPLFLVGNIYVQPPEYAARATTTTASGELTTVTTTPTGIYAPVAALPPAVQHTSTPALSQSEERANNSEGAVHSNSPASSSSTHTTTTSPGY* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00494 371 MobiDBLite consensus disorder prediction 195 212 - -
Rops1g00494 371 MobiDBLite consensus disorder prediction 329 371 - -
Rops1g00494 371 MobiDBLite consensus disorder prediction 157 212 - -
Rops1g00494 371 MobiDBLite consensus disorder prediction 58 117 - -
Rops1g00494 371 FunFam Myb family transcription factor 208 266 - -
Rops1g00494 371 MobiDBLite consensus disorder prediction 331 371 - -
Rops1g00494 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 347 IPR044787 GO:0003700|GO:0006355
Rops1g00494 371 Gene3D - 208 266 - -
Rops1g00494 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 266 IPR017930 -
Rops1g00494 371 Pfam Myb-like DNA-binding domain 211 260 IPR001005 -
Rops1g00494 371 MobiDBLite consensus disorder prediction 102 117 - -
Rops1g00494 371 SUPERFAMILY Homeodomain-like 207 267 IPR009057 -
Rops1g00494 371 MobiDBLite consensus disorder prediction 170 193 - -
Rops1g00494 371 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 264 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00494 Rops-Chr1 12944205 12946429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00494 10 324 G2-like Transcription Factor Family AT1G68670 48.640 3.72e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops1g00494 Myb_DNA-binding 2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00494 - - gmx:100819750 476.092