Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00483 ATGCAAGAACACGAAGGCTTCCTTCAACACAATAACCATGCAACTCCACGATTTTTTTTTCCTGAAGAGAAGCTCTGTAAGTGGCTTGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAATATCAAGATATACGTTTAGGTGACTTTGGTCTTGCTAAAATGTTGACATGTGACGATCTTGCTTCCTCGGTTGTGGGGGCTCCAAGTTATATGTGCCCAGAGCTCCTTGCTGATATGCCCTGTGGCTCCATGTCAGATATTTGGTCTTTGGGATGCTGTGTATAG 339 0.4189 MQEHEGFLQHNNHATPRFFFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKYQDIRLGDFGLAKMLTCDDLASSVVGAPSYMCPELLADMPCGSMSDIWSLGCCV* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00483 112 Pfam Protein kinase domain 10 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00483 112 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 20 112 - -
Rops1g00483 112 SUPERFAMILY Protein kinase-like (PK-like) 16 111 IPR011009 -
Rops1g00483 112 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00483 112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
Rops1g00483 112 Gene3D Transferase(Phosphotransferase) domain 1 7 112 - -
Rops1g00483 112 SMART serkin_6 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00483 Rops-Chr1 12453316 12453654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00483 20 112 MAP Kinase Kinase Kinase AT3G13530 42.553 9.31e-20 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Rops1g00483 Pkinase 3.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00483 K08857 - gmx:100810347 187.193