Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00470 ATGATGATAGCCGCATCACCCAGAGGTAGCTGCTGCACCACTGTTCTCTGCTTTTCGAAAATGGGTATCTCTCGTGATTCCATGCATAAGAGGCGTGCCACTGGTGGCAAGCAGAAAGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGGAGGCAACCAGCAAATACAAAGCTATTAAGCAACACATTTAGGAGGATTAGGGTTCGAGGTGGGAATGTGAAGTGGCGTGCTTTGAGACCTGATACTGCACCTTTCAAGCAGTGGTATCTCCAACATTATGGTGTTGACCTTGGTCGCAAGAAGAAGGTTGCAGCTTCTGCCAAGAAGGATGAAGAGGATGCTGAAACTGTAACTGACGAGGTGAAGAAGAATAACCACGTCTTGAGAAAATTGGAAAACCGTAAACAGAACCGGGTGCTTGATCCTCACGTTGAGGGACAATTTGGAGGTGGTCTGACATTGTTTGCGTCGAAGGCACAGTAG 483 0.4741 MMIAASPRGSCCTTVLCFSKMGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLLSNTFRRIRVRGGNVKWRALRPDTAPFKQWYLQHYGVDLGRKKKVAASAKKDEEDAETVTDEVKKNNHVLRKLENRKQNRVLDPHVEGQFGGGLTLFASKAQ* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00470 160 ProSitePatterns Ribosomal protein S8e signature. 31 50 IPR018283 GO:0003735|GO:0005840|GO:0006412
Rops1g00470 160 FunFam 40S ribosomal protein S8 84 151 - -
Rops1g00470 160 Gene3D Ribosomal protein S8e, subdomain 88 151 IPR042563 -
Rops1g00470 160 Pfam Ribosomal protein S8e 25 86 IPR022309 -
Rops1g00470 160 Coils Coil 114 134 - -
Rops1g00470 160 PANTHER 40S RIBOSOMAL PROTEIN S8 21 82 IPR001047 GO:0003735|GO:0005840|GO:0006412
Rops1g00470 160 Gene3D - 45 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00470 Rops-Chr1 12178773 12179255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00470 21 158 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 54.054 2.51e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00470 K02995 - gmx:100527325 194.126