Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00466 ATGGTGTCAGGTTATGGTGTGTGCACAAAGAGGGTTGTGGTGGACGCTCGTCACCACATGCTTGGTCGTCTCGCATCGATCGTGGCAAAGGAACTACTCAATGGCCAAAAGGTTGTTGTGGTTAGGTGTGAGGAGATTTGCATCTCTGGTGGACTCGCTGAAATGAATCTGTTTAATAATGTCGATCTTAGGCATCATTATGAAAAGAAACTTCTTGAGTTGGAACAAGAGAAAACTTTTTTGCAGGTCTCTGTGCTGAAGAAGAAACAAGATGCTCAGGCTCAACTGTTGAGACAAAAACAAAAAAGAGACGAGGCTTCAAAACGACTTCAGGAAGAGATCCAATGA 348 0.4368 MVSGYGVCTKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLAEMNLFNNVDLRHHYEKKLLELEQEKTFLQVSVLKKKQDAQAQLLRQKQKRDEASKRLQEEIQ* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00466 115 SUPERFAMILY Ribosomal protein L13 10 61 IPR036899 GO:0003735|GO:0005840|GO:0006412
Rops1g00466 115 Coils Coil 89 115 - -
Rops1g00466 115 Pfam Ribosomal protein L13 10 109 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops1g00466 115 PANTHER RIBOSOMAL PROTEIN L13 6 57 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops1g00466 115 Gene3D Ribosomal protein L13 7 113 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00466 Rops-Chr1 12138597 12139743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00466 1 52 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 88.462 5.42e-29 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00466 K02872 - gmx:100813340 101.293