Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00462 ATGAAGATTTTCGTGAAAACTCTGAAAGGAACGCACTTCGAAATTGAAGTGAATCCCTCAGACACGCTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAGGGAAAGGTTCTCAAGGATGGTTCTACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATTATGCTATCAAAGACTAAGAGCTCATCTTGTGAAGGATCTACTACTTCAACTGCACCTTCAGCTAAGTCTTCACAGACAAGTGCAGCTTCTACTCCTACCTCTGTGTCAAGTGCACCTCAAGCTCCTACTGCAACTGGGGCAATGCCTACACCTGTTACTGCCCCAGCTCCTGCTCCTGCTCCTGCTCCGGCACCTGTTCCGGCGCCTGCCCCTGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTGCCAGGGTCTGATATATATGGGCAGGCAGCATCCAATCTTGTTGCTGGAAGCAACTTGGAGGAAATAATTCAGCAAATCCTTGATATGGGTGGAGGAAGCTGGGATAGGGATACTGTTGTCCATGCTCTTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTATATTCAGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAATGCCAGCAAGTGCTCAACCTGCAAATCCTCCTGCTGCTGCTCCACAAGCAGCACCTGTTCCTTCTAGTGGACCAAATGCTAATCCCTTGGACCTCTTTCCCCAGGGCCTTCCTAATGTCGGTTCTGGTGCTGCCGGTGCTGGCTCTTTAGATTTTCTGCGCAACAGTCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCCATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTAATTCAAGAACATCAAGTTGACTTCCTTCGCATGATAAATGAACCTGTGGAAGGCGGCGAGGGGAATATACTGGGACAGCTGGCTGGTGCCATGCCACAGGCAGTGACTGTTACCCCTGAGGAGCGGCAAGCAATTGAACGTCTTGAAGCAATGGGCTTTGATCGTGCAACTGTATTGGAGGTGTACTTCGCATGTAACAAAAATGAGGAACTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGATGAATAA 1206 0.4726 MKIFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGSTLEENKVAENSFIVIMLSKTKSSSCEGSTTSTAPSAKSSQTSAASTPTSVSSAPQAPTATGAMPTPVTAPAPAPAPAPAPVPAPAPAPAPISSGSAVPGSDIYGQAASNLVAGSNLEEIIQQILDMGGGSWDRDTVVHALRAAYNNPERAVEYLYSGIPEQAEAPPVTRMPASAQPANPPAAAPQAAPVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRMINEPVEGGEGNILGQLAGAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00462 401 Gene3D - 267 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Rops1g00462 401 Gene3D - 349 396 - -
Rops1g00462 401 Gene3D - 1 80 - -
Rops1g00462 401 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 390 - -
Rops1g00462 401 SUPERFAMILY UBA-like 338 400 IPR009060 GO:0005515
Rops1g00462 401 SMART ubq_7 1 75 IPR000626 GO:0005515
Rops1g00462 401 PRINTS DNA repair protein Rad23 signature 351 367 IPR004806 GO:0006289
Rops1g00462 401 PRINTS DNA repair protein Rad23 signature 368 382 IPR004806 GO:0006289
Rops1g00462 401 PRINTS DNA repair protein Rad23 signature 302 324 IPR004806 GO:0006289
Rops1g00462 401 PRINTS DNA repair protein Rad23 signature 383 398 IPR004806 GO:0006289
Rops1g00462 401 SMART CBM 274 317 IPR006636 -
Rops1g00462 401 MobiDBLite consensus disorder prediction 80 119 - -
Rops1g00462 401 CDD Ubl_Rad23 1 74 - -
Rops1g00462 401 MobiDBLite consensus disorder prediction 80 143 - -
Rops1g00462 401 FunFam UV excision repair protein RAD23 1 80 - -
Rops1g00462 401 FunFam UV excision repair protein RAD23 B 267 332 - -
Rops1g00462 401 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 171 214 IPR015940 -
Rops1g00462 401 CDD UBA1_Rad23_plant 167 216 - -
Rops1g00462 401 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Rops1g00462 401 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Rops1g00462 401 MobiDBLite consensus disorder prediction 222 258 - -
Rops1g00462 401 Pfam XPC-binding domain 276 331 IPR015360 GO:0003684|GO:0006289|GO:0043161
Rops1g00462 401 MobiDBLite consensus disorder prediction 124 143 - -
Rops1g00462 401 SMART uba_6 173 213 IPR015940 -
Rops1g00462 401 SMART uba_6 357 394 IPR015940 -
Rops1g00462 401 FunFam UV excision repair protein RAD23 homolog 166 216 - -
Rops1g00462 401 Gene3D - 166 216 - -
Rops1g00462 401 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 354 395 IPR015940 -
Rops1g00462 401 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Rops1g00462 401 Pfam UBA/TS-N domain 173 211 IPR015940 -
Rops1g00462 401 Pfam UBA/TS-N domain 357 392 IPR015940 -
Rops1g00462 401 FunFam UV excision repair protein RAD23 homolog 348 396 - -
Rops1g00462 401 SUPERFAMILY UBA-like 170 225 IPR009060 GO:0005515
Rops1g00462 401 NCBIfam UV excision repair protein Rad23 1 400 IPR004806 GO:0006289
Rops1g00462 401 SUPERFAMILY XPC-binding domain 273 338 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00462 Rops-Chr1 12065013 12081837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00462 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.892 5.76e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00462 K10839 - gmx:100809066 594.734