Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00456 ATGAACTCGAGAGCCCTCTTCAACCCTTGTTGTTCTCTCCTTTTTCACTCATACATCATTTTCTTCTCTATCCTAACCACAATCACTTTATCTTCTCATCCAAAGTTCGAAGCTTGTGTGCCTAAGACCTGTGGTAATGGTCAAAACATAAACTACCCATTCTACATCCAAGAAAAACAAGAACCCTTTTGTGGGAATCCGGGTTTTGAGCTCACTTGTGGCAAGAATGGTTTCCCAATTCTCAATCTTATCAACACCCAATACATCATTCACAAAATTTTCTACAGCAACCACTCACTCCGAGTGTCCAACCCCGCGTTTTCAAAATCGAACACCTCTTCATGTATTGCTCCCACCCAGAACCTCACAGTTGGCAGGTACAGGTTCTGGCTTGCTCCCAATCAAATGGATTTATGGTTGTTCTATGGCTGCAACTTAACGTCGCTTCCTGACGAGATCCAAGAGCGTGAAATTGGGTGCTCTGCAGAGAACCAAACGAGTTCAGTTGTGGGCTTATATAGGAAGGATAAAAGATTGAGGTTAGCGCGGGAGAATTGCAAGGGTAGGGTGGTGAATACAACAGTGGAAGATGAGAAAGGAGAGATTGGAGAGGCATTGAAAAAAGGGTTTGTGTTGAATTGGAATGCTACTAATTGCACCGAATGCACGAGCAGTGGAGGGAGGTGTGGGTTCGACTTAGACCCTCTTACATACGCTTTCAGGTGCTATTGCCCTGATAGAGTTCATGCCGTGAAATGTGATCCAAAGGCGCAGAGGTTGAGCCAAACAGGGAAACTTGGCATAGGTATAGGTGTTGGATTTGCAAGCATCTTGATAATTGGGTTGCTCCTCCTACTTTACAAAAGAAAACACGGTTCCTCAGGTGGTCAATTCCAAACAAGAAATACTCATTCTAACTCCTCGAATCCGGATGTAGAAAATGTCATGGTGTACTTTGGAGTTCCCGTCTTCTCCTACAAGGAACTTGATGAAGCAACAAATCATTTCGACCACTATAGACAAATTGGAGATGGAGGCTTTGGGACTGTCTACTATGGGAAACTCCGAGATGGACGGGAAGTTGCTGTGAAGCACTTATTTGAGAACAACTACAGGCGAGTAGAACAGTTCCTGAATGAAGTTAAGATCCTCACATGTTTGCGCCACAGGAATCTCGTGTCACTCTATGGCTGCACTTCACGACACAGCCGTGAACTGTTGCTTGTGTATGAATATATTCCAAATGGCACCATTGCTAGTCATCTCGCAAAGCCTGGCTTACTACCATGGTCTACACGACTCAAAATTGCCATAGAGATTGCTAGTGCATTGGCTTATCTTCATGCTTCTGAGATTATTCACCGTGATGTGAAAACCAACAACATTCTCCTTGACAACAGTTATTGTGTTAAAGTTGTGGATTTTGGGCTTTCAAGACTATTCCCTAATGATGTCACCCATGTGTCCACTGCACCACAAGGGACCCCAGGTTATGTTGACCCAGAATACTACCAATGCTACCAGCTTACTAGCAAGAGTGATGTATATAGCTTTGGAGTTGTGCTCATTGAGCTAATATCATCTAAGCCAGCTGTTGATATGAACAGGCATAAGGATGAGATCAACTTGTCAGATCTAGCCATAAAGAAGATTCAAGAAAGTGCATTAAGTGAGCTGGTTGACCCTTCTCTTGGTTTTGACTCAGACAATGAGATTAAGAGGATGATAGTTTCGGTGATAGAATTGGCTTTTCAATGTTTGCAACGGGACAAGGAATTGAGACCTTCCATGGATGAAGCCTTTGAGGTGCTAAGGAGAATTGAAAGTGGGAAGGATCATCTAGAAGAAGCAGATGTTCATGGTTCTGGGGTTAATGTACAAACCTCATCATCGCCAACCTTACCAGAATGTGATGAAGTTGGATTACTGAAGAATATGAAGTTACCTTCTTCACCAATATCCGTTACTGATGGCTGGGAAAGTAAATCTACTACGCCTAATATTAGTTGTTAA 2013 0.4307 MNSRALFNPCCSLLFHSYIIFFSILTTITLSSHPKFEACVPKTCGNGQNINYPFYIQEKQEPFCGNPGFELTCGKNGFPILNLINTQYIIHKIFYSNHSLRVSNPAFSKSNTSSCIAPTQNLTVGRYRFWLAPNQMDLWLFYGCNLTSLPDEIQEREIGCSAENQTSSVVGLYRKDKRLRLARENCKGRVVNTTVEDEKGEIGEALKKGFVLNWNATNCTECTSSGGRCGFDLDPLTYAFRCYCPDRVHAVKCDPKAQRLSQTGKLGIGIGVGFASILIIGLLLLLYKRKHGSSGGQFQTRNTHSNSSNPDVENVMVYFGVPVFSYKELDEATNHFDHYRQIGDGGFGTVYYGKLRDGREVAVKHLFENNYRRVEQFLNEVKILTCLRHRNLVSLYGCTSRHSRELLLVYEYIPNGTIASHLAKPGLLPWSTRLKIAIEIASALAYLHASEIIHRDVKTNNILLDNSYCVKVVDFGLSRLFPNDVTHVSTAPQGTPGYVDPEYYQCYQLTSKSDVYSFGVVLIELISSKPAVDMNRHKDEINLSDLAIKKIQESALSELVDPSLGFDSDNEIKRMIVSVIELAFQCLQRDKELRPSMDEAFEVLRRIESGKDHLEEADVHGSGVNVQTSSSPTLPECDEVGLLKNMKLPSSPISVTDGWESKSTTPNISC* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00456 670 FunFam Wall-associated receptor kinase-like 20 413 617 - -
Rops1g00456 670 Pfam Wall-associated receptor kinase galacturonan-binding 39 103 IPR025287 GO:0030247
Rops1g00456 670 SUPERFAMILY Protein kinase-like (PK-like) 309 604 IPR011009 -
Rops1g00456 670 Pfam Protein kinase domain 338 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00456 670 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Rops1g00456 670 Gene3D Transferase(Phosphotransferase) domain 1 413 619 - -
Rops1g00456 670 ProSiteProfiles Protein kinase domain profile. 336 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00456 670 Pfam Wall-associated receptor kinase C-terminal 176 246 IPR032872 -
Rops1g00456 670 Gene3D Phosphorylase Kinase; domain 1 307 412 - -
Rops1g00456 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Rops1g00456 670 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 663 IPR044652 GO:0004672
Rops1g00456 670 SMART serkin_6 336 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00456 Rops-Chr1 11932837 11940928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00456 218 669 Receptor kinase-like Gene Family AT1G25390 55.032 7.61e-165 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops1g00456 Pkinase 5.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00456 - - gmx:100808963 932.169