LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops1g00454	ATGAGTAGCAATGACCAAGCTTCTGGTGCTAGTCACAACAACATCAGGGGTGTAATCTGCAACGCTGCTGCTGGTGCTACTGCTGGGGCAATAGCGGCTACGTTTGTGTGCCCATTGGATGTGATCAAGACAAGGCTACAAGTTCATGGCTTGCCTTCTTCACAGAAAGGTAGTGTCATTGTCACGAGCTTGCAGAATATAATGAGAACCGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATACTGGCATTACTTCCAAACTGGGCAGTTTACTTCACAGGTTATGAGCAACTAAAGGACTTGCTTCGTTCACATGATGGTGGCAATGAACTCACAACTATTGGAAATATTATGGCTGCTGCTGGTGCTGGAGCAGCTACAGCAATTTCTACAAATCCATTGTGGGTTGTTAAAACAAGACTCCAAACACAAGGAATGAGGTCTGATGTTGTTCCATATAAAAGCATTCTTTCTGCTTTGACAAGGATTACACATGAGGAAGGCATACGAGGACTATATAGTGGCATCGTGCCTTCATTGGCTGGCATAAGTCACGTTGCAATTCAATTCCCAGTATACGAAAAGATCAAGTCATACATAGCAGAGAAAGATAACACAACTGTTGACAAGTTAAGTCCTGGGAATGTTGCCATCGCATCATCAATTTCAAAAGTAATTGCCTCTGTAATAACTTATCCGCACGAGGTAATACGTTCCAGGCTGCAAGAGCAAGGCCAAGCCAAAAATATTGGGGTCCAGTATGCAGGGGTCATTGATTGTATTAAGAAGGTGTTTCAAAAGGATGGCATTCCAGGCTTTTATCGTGGTTGTGCAACCAATCTATTAAGAACAACTCCATCTGCTGTTATTACATTCACCAGTTATGAGATGATAAACAGGTTTTTGGAGCGCGTTATACCTCAGGAAGACAAGGGATACCCACAAGGCCGTTCTAGATCCAATGAGATTAGCAAGCCCCAGCCAGAAGCCAGTGACATTAACATTAAGAATGGCACTGATAGAGGGCAATCACCACCATTCCCAATCTAA	1059	0.4372	MSSNDQASGASHNNIRGVICNAAAGATAGAIAATFVCPLDVIKTRLQVHGLPSSQKGSVIVTSLQNIMRTEGFRGMYRGLSPTILALLPNWAVYFTGYEQLKDLLRSHDGGNELTTIGNIMAAAGAGAATAISTNPLWVVKTRLQTQGMRSDVVPYKSILSALTRITHEEGIRGLYSGIVPSLAGISHVAIQFPVYEKIKSYIAEKDNTTVDKLSPGNVAIASSISKVIASVITYPHEVIRSRLQEQGQAKNIGVQYAGVIDCIKKVFQKDGIPGFYRGCATNLLRTTPSAVITFTSYEMINRFLERVIPQEDKGYPQGRSRSNEISKPQPEASDINIKNGTDRGQSPPFPI*	353

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops1g00454	352	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	19	311	IPR044712	GO:0006862\|GO:0055085
	Rops1g00454	352	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	114	202	IPR018108	-
	Rops1g00454	352	SUPERFAMILY	Mitochondrial carrier	17	300	IPR023395	-
	Rops1g00454	352	PRINTS	Mitochondrial carrier protein signature	34	48	IPR002067	GO:0055085
	Rops1g00454	352	PRINTS	Mitochondrial carrier protein signature	223	245	IPR002067	GO:0055085
	Rops1g00454	352	PRINTS	Mitochondrial carrier protein signature	79	99	IPR002067	GO:0055085
	Rops1g00454	352	PRINTS	Mitochondrial carrier protein signature	129	147	IPR002067	GO:0055085
	Rops1g00454	352	PRINTS	Mitochondrial carrier protein signature	21	34	IPR002067	GO:0055085
	Rops1g00454	352	MobiDBLite	consensus disorder prediction	320	344	-	-
	Rops1g00454	352	MobiDBLite	consensus disorder prediction	312	352	-	-
	Rops1g00454	352	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	16	104	IPR018108	-
	Rops1g00454	352	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	214	304	IPR018108	-
	Rops1g00454	352	Gene3D	Mitochondrial carrier domain	112	314	IPR023395	-
	Rops1g00454	352	Gene3D	Mitochondrial carrier domain	3	111	IPR023395	-
	Rops1g00454	352	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	17	305	-	-
	Rops1g00454	352	Pfam	Mitochondrial carrier protein	18	107	IPR018108	-
	Rops1g00454	352	Pfam	Mitochondrial carrier protein	114	205	IPR018108	-
	Rops1g00454	352	Pfam	Mitochondrial carrier protein	214	306	IPR018108	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops1g00454	Rops-Chr1	11901989	11907033	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops1g00454	8	352	Chloroplast and Mitochondria Gene Families	AT1G25380	64.326	2.92e-147	418

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops1g00454	K15115		-	gmx:100816376	560.836