Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00453 ATGGCAGCAGCACCACCACCTTCTTCTCTTTTCATTCTCTCATTAACCTTCCACTCTCTTCTCCTCATTCTAGAAGCCTCCAGAAACCCAGATTTCGAACCACTAATGGCATTCAAAACCGCTTCCGACACATCCAACAAGCTCAATACATGGAACACCAGCACCGACCCATGCACATGGGACGGTGTCTCCTGTCTCAGGAACAACCGCGTCTCGCGTCTCGTCCTCGAAGACCTCGACCTCCGAGGCTCCTTTGAGCCATTAACCTCTCTGACTCAGCTCCGAGTCCTGAGCCTCAAACACAACCGTTTCAACGGTCCCATTCCGAGTAGCCTCTCCAATCTCACCGCCATGAGGCTCCTCTTCCTCTCTCACAACAAATTTTCCGGCGAGTTCCCTTCAACGATCACGTCGCTCACCCACCTCTACCGTCTCGATCTGTCCCACAACAACCTCTCCGGCGAGATTCCGGCGAATATCAACCGTCTGACCCACCTCCTCACTTTCCGCGTCGACGGGAACCAAATCAATGGCCACATTCCGGACATGAAAAACCTCTCATATCTTCAAGACTTCAACGTCTCCGGCAACCGCCTCTCGGGTCGAATACCTGAATCGCTTTCGGGTTTTCCGGGATCCGCTTTTGCTCAAAACCCGTCCCTTTGTGGAGCCCCGTTGCTGAAATGTAAAGACGTCCCTGCCCTCGCTTCACCCTTGGTGCCTACCCCTTCAACTTCAATAACAGTGCCATCTTCACCGAGTTCAGTACCCGAAAATAAAACCCGACAAAACGGAGCTCCAAAAATGGGACCTGCGGTTTTAATCGCCATTGTCCTCGGCGATGTTTTGGTGCTGGCCGTGGTGTCTCTGCTTCTCTACTGCTACTTCTGGCGAAACTATTCTGCGGAATTCAGGGAAAGGAAAAAAGAAGGGTCCAATTCGAATTCGAATTCAAATTCGGGTGAGAAGACGGTTTATGCAAAACCAAGCGTTTACGGTGGTGGGTTGGAGAAAGGTCAAATGGTGTTCTTCGAAGGGGTGAAGAGGTTTGAGCTTGAGGACTTGCTGCGTGCCTCTGCGGAAATGCTGGGGAAAGGTGTGTTTGGTACTGCCTATAAAGCTGTTCTTGATGATAGCAGTGTTGTTGCAGTGAAGAGACTGAAGGAGGTTCAAGTTGGAGGGAAGAGAGAGTTCGAGCAGCGAATGGAAGTGCTGGGAAAGTTGAGACACCCCAATGTTGTTAGCTTGAGGGCTTACTATTTCGCCAGGGATGAGAAATTGCTTGTCTCTGATTACATGCCCAATGGTAGCTTGTTCTGGCTCCTTCACGGTAACCGAGGACCCGGGCGAACCCCACTGGATTGGACCACAAGGCTGAAGATAGCAGCCGGAGCGGCACGAGGTGTGGCCTTCATCCACAACTCATGCAAATCCCATAACCACAATAACAACTTCACCCACGGTAACATCAAATCCACAAACGTCCTTGTTGACGTGGCGGGCAATGCACGCGTGGCTGATTTTGGGCTCTCCATCTTCTCGGTCCCATCAAACGGAAGATCCAACGGCTACCGCGCGCCGGAGGTATCGGACTGTCGAAAACAGTCCCAGAAGTCTGACGTGTACTCCTTTGGCGTTCTGCTGATGGAGATGCTGACGGGGAAGTGTCCCTCCGCCGTGGACGGTGGCGCGGCGGTGGAGCTCCCTCGGTGGGTGCAGTCGGTGGTGAGGGAGGAATGGACGGCTGAGGTGTTTGATCTTGAGCTGATGAGGTACAAGGATATTGAGGAGGAAATGGTGGCGCTGCTGCAGATAGCTATGGCTTGTATTGCTGCTGCACCTGATCAACGGCCCAGGATGTGCCACGTGGTCAAGATGATTGAGGAGTTGCGTGGGGTCGAGGTGTCACCGTGTCATGACACGTTGGACTCTGTGTCCGAGTCACCTTCCGTGTCTGAAGATGCATATGGAGGTGGAGGCAGTGTTTTGTAA 1992 0.5266 MAAAPPPSSLFILSLTFHSLLLILEASRNPDFEPLMAFKTASDTSNKLNTWNTSTDPCTWDGVSCLRNNRVSRLVLEDLDLRGSFEPLTSLTQLRVLSLKHNRFNGPIPSSLSNLTAMRLLFLSHNKFSGEFPSTITSLTHLYRLDLSHNNLSGEIPANINRLTHLLTFRVDGNQINGHIPDMKNLSYLQDFNVSGNRLSGRIPESLSGFPGSAFAQNPSLCGAPLLKCKDVPALASPLVPTPSTSITVPSSPSSVPENKTRQNGAPKMGPAVLIAIVLGDVLVLAVVSLLLYCYFWRNYSAEFRERKKEGSNSNSNSNSGEKTVYAKPSVYGGGLEKGQMVFFEGVKRFELEDLLRASAEMLGKGVFGTAYKAVLDDSSVVAVKRLKEVQVGGKREFEQRMEVLGKLRHPNVVSLRAYYFARDEKLLVSDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSHNHNNNFTHGNIKSTNVLVDVAGNARVADFGLSIFSVPSNGRSNGYRAPEVSDCRKQSQKSDVYSFGVLLMEMLTGKCPSAVDGGAAVELPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVALLQIAMACIAAAPDQRPRMCHVVKMIEELRGVEVSPCHDTLDSVSESPSVSEDAYGGGGSVL* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00453 663 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Rops1g00453 663 SUPERFAMILY Protein kinase-like (PK-like) 361 627 IPR011009 -
Rops1g00453 663 Gene3D Ribonuclease Inhibitor 26 88 IPR032675 -
Rops1g00453 663 Gene3D Ribonuclease Inhibitor 89 233 IPR032675 -
Rops1g00453 663 MobiDBLite consensus disorder prediction 243 262 - -
Rops1g00453 663 MobiDBLite consensus disorder prediction 243 265 - -
Rops1g00453 663 ProSiteProfiles Protein kinase domain profile. 357 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00453 663 Gene3D Transferase(Phosphotransferase) domain 1 433 644 - -
Rops1g00453 663 FunFam Nuclear pore complex protein NUP107 28 182 - -
Rops1g00453 663 FunFam pollen receptor-like kinase 1 329 432 - -
Rops1g00453 663 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 632 IPR046959 -
Rops1g00453 663 Pfam Protein kinase domain 361 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00453 663 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Rops1g00453 663 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 433 637 - -
Rops1g00453 663 Gene3D Phosphorylase Kinase; domain 1 329 432 - -
Rops1g00453 663 SUPERFAMILY L domain-like 45 210 - -
Rops1g00453 663 MobiDBLite consensus disorder prediction 640 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00453 Rops-Chr1 11875811 11879605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00453 31 658 Receptor kinase-like Gene Family AT1G68400 63.790 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops1g00453 Pkinase 7.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00453 - - vum:124834036 843.188