Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00450 ATGCGGAAGATTGAAGCCACGTGTGCCAACTATAAAATGTTCCCTCCTTTATCTTCATCACCAGTACATACGCTTAAAAGCCTCTCGTGCTTTATTTTCTGCCACCCTGCACCAGAACCTCCTTTGTTGAAAAATCTGAACCTGTATTTGCCACCACATTCTCAATCTCTCATTAGCAACGTGGTCATAATGCAAGGCATGGATCAATCCATTCCCTCCAAATCCTCAACCCTCCAATCACCAATTCTGATATTCTCTTTATTCCATAAGGCCATTAGCTCTGAGCTTCAGTCCCTCCACCAAGCTTCCTTGGATTTCGTTTCCAATCACCATGACACTGCTGCCTCTCACCTCAAATCCTTGTTCCACAGCTGTCACTTTCTTCGCACCATCTACAAACACCACTGCAATGCTGAGGACCAGGTCATATTTCCTGCCTTAGATAAACGTGTGAAGAATGTTGCACGCACCTATTTTTTGGAACATGAGGGGGAGGGTCTCCTTTTTGATCAGTTGTCCAAGCTGCTAAATTCCAATTTGCTATATGAAGAGAGCTATAGGAGAGAATTAGCTTCTTGTATCGGAGCCCTTCGAACATCAATTAACCAGCACATGTTTAAGGAAGAGGAACAGGTCTTCCCTTTGGTCATTGAGAAATTTTCATCTGAAGAGCAGGCATCACTGGTATGGCAATTTCTTTGTAGCATACCAGTTAAAATGATGGCAGAATTGCTTCCCTGGCTTGCTTCATATATATCATCTGATGAGCATCAGGATCTGCTTACGTGCTTGTGCACGGTTATCCCCAAAGAGAAGCTTCTTCATCAGGTCATCTTTGGATGGATGGAAGGACTAAAGATTAAATGTAGAAACTGCACGCATGATACTAAAGTTCAATGGCAGGATGCTGGAACAAGCAACTTACCCAGTCATAATAATGAAAAGGAGTACTGTAATTGTGGACCTTCCAAAACTGTCAAAAGGAAATGGGTGGAGCTTAGCGAAGATCCTACCAATTCCACTATATCATGCCCTTTAGATGAATTATTACTTTGGCATAAGGCTATAAAGCTTGAATTGAGTGATTTGGCAGAGACAGCTAGAAAAATGCAACTATCTGAAGAATTTTCTGAATTGTCTTCATTTAATGGGAGGCTGCAATTTATAACTGAAGTCTGCATCTTCCATAGCATTGCTGAGGACAAAGTTATATTCCCTGCTATAAATGCAGAGCTGTATTTTTTCCAAGACCACACAGATGAAGAACTCCAATTTGACAATCTTAGGTGCCTTATAGAAGTTATCCAAAGTGCTGGAGCCAACCCATCATCTCCTGAATTTTATGTTAGGTTGAGCTCCCATGCTGAACAGATAATGAATACCATACTGAAGCACTTTGAAAATGAGGAAGCTCAGGTTCTTCCACTTGCACGAAAGCTATTTAGCCCCCAAAGACAACGAGAATTACTTTATGAAAGCTTGTGCTTGATGCCCTTGAAATTGATCGAATGTGTATTACCATGGCTAGTAGGATCACTTAGTGAAACACAAGTTAGGTCGTTTCTTCAGAATATGTATATGGCAGCCCCGGCTTCAGATCATGCATTAGTTACCCTCTTTTCTGGTTGGGCATGCAACAGACGATCCAGGAACAGTTGCTTCTCTTCAAGTGTGACAGGTTCATGTCCTGCCAGCAGATTGATGGAGATGGAAAGCACTAGCCTATCATTTTGCATGTGTGAATCTTCACTCAGTCCCAATAAAAGATCTTCACATGTTCAACAAGATGATGCAAATGGCAATATTGGACCAAAGCATGGAAAGCCAGAACCAAGTCAAGGCAATGATGTTTCTAACCTGATGGTAACCAGAGAAACTCTAAACTTAACTTATAATCAGTCTTGCTGTGTCCCTGGATTAGGAGTGAATGCAAGTCATCTAGGAGGTGGTTCTTTGACCCTAACAAAGTCTCTTAGAGCCTTATCTGATTGTCCGTTTGCACCTTTTCTCAATTCCGGTCTTTTTATGTCAGAAACCGATATAGTCTCTCCTGACAATCAATCCACAATCCGGCCTATTGATAACATATTTAAATTTCACAAAGCCTTCCGTAAGGACTTGGTGTATTTAGATGTTGAATCTGGAAAACTTAATGATTATGATGAAATTTTCGTTCAGCAATTCACTGGTAGGTTTTGCTTGTTGTGGGGTTTGTATAGAGCTCATAGTAATGCAGAAGATCATATAGTATTTCCAGCATTAGAATCTAAAGAGAATCTTCACAATGTGAGCCATTCTTACACTTTGGACCACCAGCAGGAAGAGAAATTATTTTTAGATATTTCTTCTGGACTCACTCAGCTTATTAGATTACATGAATTGGTAAATAAAGGGAATTCGTCTGACCATCTAGCCAACTGTTACTCTAACAATGCTGGTTGCTCTGATCTCTTACAAAATTACAGTGAACTCTGTACAAAGATTCAGGGCATGTGCAAATCTATCAGAGTTACACTAGATCAACATATTGTCAGGGAGGAACTTGAATTATGGCCATTGTTTGATAAACACTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTCGTATAATTGGTACTACAGGGGCAGAGGTTCTCCAATCAATGGTGCCATGGGTAACTTCTGCTCTCACACAAGATGAGCAAAACAAAATGATAGATACATGGAAGCAGGCTACCAAAAACACTATGTTCAATGAGTGGCTGAATGAATGGTGGAAAGGACCTGCTTCATCTTTAAATATCACTACACCTGAAGACCATTCACTAGACACAGGGAATAGCTTTCAAGCCTTCAAACCTGGATGGAAAGATATCTTCAGGATGAACCAGAATGAACTTGAATCAGAAATAAGAAAAGTTGCTCAAGATTCAACTCTTGATCCAAGAAGAAAAACATATCTTATTCAAAATCTAATGACCAGTCGCTGGATAGCTTCTCAGCAGAAGTTATCTCAAAGAACAGGAGGTGAATCTTCGAAAGGAGAAGAATTATTGGAAACTTCACCTTCATTTCATGATCCAGGGAAAAAATTCTTTGGTTGTGAGCATTACAAAAGAAATTGTAAACTCCGTGCTGCTTGCTGTGGAAAACTATTCACATGTAGGTTCTGCCATGACAAAGTTAGTGACCATTCAATGGATAGGAAGGCTACGACTGAGATGATGTGCATGCGCTGCCTTCAAATACAGCCTGTTGGACCAGTTTGTGCAACACCTTCCTGTGGTCGTCTCCCAATGGCAAAGTACTACTGTAGTATTTGCAAATTTTTTGATGATGAAAGGATGGTTTATCATTGCCCTTTCTGCAATCTATGCCGTCTGGGAAAGGGACTTGGTGTTGACTTCTTTCATTGCATGCAGTGTAATTGTTGCTTGTCAATGAAATTGGTTGATCACCTTTGCCGGGAAAAAGGTTTAGAAACAAACTGCCCCATCTGCTGTGATTTTTTGTTCACATCCAGTGCATCTGTCAGGGCTCTCCCTTGTGGCCATTTCATGCATTCTGCTTGCTTTCAGGCATACACATGCAGTCACTACATCTGTCCAATTTGTAGCAAATCTTTGGGAGATATGGCGGTTTACTTTGGCATGCTTGACGCTCTATTGGCTTCTGAGGAACTCCCAGAAGAATATCGGAATCGATGTCAGGATATACTTTGTAATGACTGCCATAAGAAGGGTACTGCTCCATTCCATTGGCTATACCACAAGTGTGGGTTTTGTGGATCTTACAACACAAGGTTAATTTGA 3792 0.4074 MRKIEATCANYKMFPPLSSSPVHTLKSLSCFIFCHPAPEPPLLKNLNLYLPPHSQSLISNVVIMQGMDQSIPSKSSTLQSPILIFSLFHKAISSELQSLHQASLDFVSNHHDTAASHLKSLFHSCHFLRTIYKHHCNAEDQVIFPALDKRVKNVARTYFLEHEGEGLLFDQLSKLLNSNLLYEESYRRELASCIGALRTSINQHMFKEEEQVFPLVIEKFSSEEQASLVWQFLCSIPVKMMAELLPWLASYISSDEHQDLLTCLCTVIPKEKLLHQVIFGWMEGLKIKCRNCTHDTKVQWQDAGTSNLPSHNNEKEYCNCGPSKTVKRKWVELSEDPTNSTISCPLDELLLWHKAIKLELSDLAETARKMQLSEEFSELSSFNGRLQFITEVCIFHSIAEDKVIFPAINAELYFFQDHTDEELQFDNLRCLIEVIQSAGANPSSPEFYVRLSSHAEQIMNTILKHFENEEAQVLPLARKLFSPQRQRELLYESLCLMPLKLIECVLPWLVGSLSETQVRSFLQNMYMAAPASDHALVTLFSGWACNRRSRNSCFSSSVTGSCPASRLMEMESTSLSFCMCESSLSPNKRSSHVQQDDANGNIGPKHGKPEPSQGNDVSNLMVTRETLNLTYNQSCCVPGLGVNASHLGGGSLTLTKSLRALSDCPFAPFLNSGLFMSETDIVSPDNQSTIRPIDNIFKFHKAFRKDLVYLDVESGKLNDYDEIFVQQFTGRFCLLWGLYRAHSNAEDHIVFPALESKENLHNVSHSYTLDHQQEEKLFLDISSGLTQLIRLHELVNKGNSSDHLANCYSNNAGCSDLLQNYSELCTKIQGMCKSIRVTLDQHIVREELELWPLFDKHFSVEEQDKIVGRIIGTTGAEVLQSMVPWVTSALTQDEQNKMIDTWKQATKNTMFNEWLNEWWKGPASSLNITTPEDHSLDTGNSFQAFKPGWKDIFRMNQNELESEIRKVAQDSTLDPRRKTYLIQNLMTSRWIASQQKLSQRTGGESSKGEELLETSPSFHDPGKKFFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLQIQPVGPVCATPSCGRLPMAKYYCSICKFFDDERMVYHCPFCNLCRLGKGLGVDFFHCMQCNCCLSMKLVDHLCREKGLETNCPICCDFLFTSSASVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEELPEEYRNRCQDILCNDCHKKGTAPFHWLYHKCGFCGSYNTRLI* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00450 1263 Pfam Hemerythrin HHE cation binding domain 86 216 IPR012312 -
Rops1g00450 1263 FunFam Zinc finger protein BRUTUS 687 917 - -
Rops1g00450 1263 CDD RING-H2_Pirh2-like 1156 1199 - -
Rops1g00450 1263 Gene3D nmb1532 protein domain like 349 492 - -
Rops1g00450 1263 Gene3D nmb1532 protein domain like 79 234 - -
Rops1g00450 1263 SMART ring_2 1157 1198 IPR001841 -
Rops1g00450 1263 FunFam Zinc finger protein-related isoform 1 1152 1201 - -
Rops1g00450 1263 MobiDBLite consensus disorder prediction 993 1013 - -
Rops1g00450 1263 Pfam CHY zinc finger 1028 1103 IPR008913 GO:0008270
Rops1g00450 1263 ProSiteProfiles Zinc finger CHY-type profile. 1021 1090 IPR008913 GO:0008270
Rops1g00450 1263 Gene3D - 1227 1263 - -
Rops1g00450 1263 CDD Hr-like 347 475 - -
Rops1g00450 1263 ProSiteProfiles Zinc finger RING-type profile. 1157 1199 IPR001841 -
Rops1g00450 1263 Pfam Ring finger domain 1156 1198 IPR001841 -
Rops1g00450 1263 MobiDBLite consensus disorder prediction 588 617 - -
Rops1g00450 1263 CDD Hr-like 696 852 - -
Rops1g00450 1263 Pfam Zinc-ribbon 1204 1261 IPR039512 -
Rops1g00450 1263 MobiDBLite consensus disorder prediction 993 1012 - -
Rops1g00450 1263 CDD Hr-like 84 214 - -
Rops1g00450 1263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1152 1201 IPR013083 -
Rops1g00450 1263 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 735 1263 - -
Rops1g00450 1263 ProSiteProfiles Zinc finger CTCHY-type profile. 1093 1156 IPR017921 -
Rops1g00450 1263 SUPERFAMILY RING/U-box 1156 1202 - -
Rops1g00450 1263 Gene3D nmb1532 protein domain like 687 918 - -
Rops1g00450 1263 SUPERFAMILY Zinc hairpin stack 1094 1149 IPR037275 -
Rops1g00450 1263 SUPERFAMILY CHY zinc finger-like 1021 1084 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00450 Rops-Chr1 11838055 11848287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00450 79 261 C2H2 Transcription Factor Family AT3G18290 27.315 1.96e-17 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00450 K16276 - gmx:100783072 2003.79