Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00449 ATGGGTGATCAAATCCAGGCTCACGCTAAAAGAATGAACCCCACTTCCACCACGTGCTTAAAGCTCTTCGGTTTCAGCGTCCACGAAGACATGGACGATGAAGCAGCGCTTGAAGACGCGTCAGACTCCGTCGTCAAGGCCACTTCCCCGTCTGGGTCGACGGACTCCGGCGGAGGAGACGCCGGCATAAATCCTTCCTCCGGCGACCGGAAATACGAGTGCCAGTACTGTTGCCGAGAGTTCGCAAACTCGCAAGCACTTGGTGGGCACCAGAACGCGCACAAGAAAGAGCGTCAACAGCTGAAGCGCGCGCAGTTACAGGCAACACGAAACGCCGCCGTTTCGTTCGTTCGGAATCCTATCATCTCCGCCTTCGCCCCTCCGCCGCACCTTCTCGCTCCGTCGGGACCCGTGGTGGTGCCGGCGGCCCCTCCGTCGTGGGTCTACATGCCGCAACGTGCTGCGCCTCCTCCCTTCCACGTGTCGGTTTCACACGGTTGTATGTTCCCCTCGGCGAACAACAACAACAACAACGGCAACAACTATAGCATTATAACGGGTGCAAGATCCGCGAGCTCAGGAATGTTACCCTACGCTGGCGGTGCAGGGGATTCCTCAACGATGGGCTCGCAAGTACAGGCCCGGGCCCACTTCGGAAGGGTTGATGGGCCATCTTTGAGTGGGTTCTCCTCTAAAGGAGATGTGGGGCCCAACTTTGATGATGGATTCGGCTTGGATTTGCACCTTAGCCTAGCCCCACCGTGA 765 0.5817 MGDQIQAHAKRMNPTSTTCLKLFGFSVHEDMDDEAALEDASDSVVKATSPSGSTDSGGGDAGINPSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFVRNPIISAFAPPPHLLAPSGPVVVPAAPPSWVYMPQRAAPPPFHVSVSHGCMFPSANNNNNNGNNYSIITGARSASSGMLPYAGGAGDSSTMGSQVQARAHFGRVDGPSLSGFSSKGDVGPNFDDGFGLDLHLSLAPP* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00449 254 FunFam Zinc finger protein GIS3 60 122 - -
Rops1g00449 254 SUPERFAMILY beta-beta-alpha zinc fingers 68 99 IPR036236 -
Rops1g00449 254 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Rops1g00449 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Rops1g00449 254 MobiDBLite consensus disorder prediction 44 61 - -
Rops1g00449 254 MobiDBLite consensus disorder prediction 34 66 - -
Rops1g00449 254 PANTHER ZINC FINGER PROTEIN 5 11 253 IPR044299 GO:0010090
Rops1g00449 254 Gene3D Classic Zinc Finger 62 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00449 Rops-Chr1 11816177 11817129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00449 15 253 C2H2 Transcription Factor Family AT1G68360 49.237 1.23e-57 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00449 - - tpra:123911684 343.584