Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00424 ATGCGAAGGATTCTTCCGTCTCACGCGAAAATCTCTGATGATGCGAAGGAGACGGTGCAAGAGTGTGTGTCTGAGTACATTAGCTTCATCACTTCAGAAGCCAACGAGAGGTGCCAGAGAGAGCAAAGGAAGACTGTGACCGCAGAGGATGTGCTTTGGGCAATGGAAAAGCTTGGATTTGATGACTACCTTCACCCTCTCACCCTTTTCCTTCAACGTTATCGTGAGAGTGAAGGAGAACCTGCTTCTGTGAAACGCACCTCTGCTCTTGTGAATGTGATGCCTTCTCATCCCCCACACCCACCACCACCTCCTCCACAACCACAACCACTTGCTTATGCTTATGGATTTGGATCCATGTTTGACTCTGACCCATATGCCTCTGCCTCAGACGCTTCTTTTGCCAACTTTCATTCTTTTCCTCACCTCAAACGTGATCCCCAGTGA 447 0.4899 MRRILPSHAKISDDAKETVQECVSEYISFITSEANERCQREQRKTVTAEDVLWAMEKLGFDDYLHPLTLFLQRYRESEGEPASVKRTSALVNVMPSHPPHPPPPPPQPQPLAYAYGFGSMFDSDPYASASDASFANFHSFPHLKRDPQ* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00424 148 MobiDBLite consensus disorder prediction 95 111 - -
Rops1g00424 148 ProSitePatterns NF-YB/HAP3 subunit signature. 22 38 IPR003956 GO:0005634|GO:0006355|GO:0043565
Rops1g00424 148 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Rops1g00424 148 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Rops1g00424 148 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Rops1g00424 148 MobiDBLite consensus disorder prediction 91 114 - -
Rops1g00424 148 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
Rops1g00424 148 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 85 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops1g00424 148 SUPERFAMILY Histone-fold 1 87 IPR009072 GO:0046982
Rops1g00424 148 Gene3D Histone, subunit A 1 92 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00424 Rops-Chr1 11359095 11359541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00424 1 124 CCAAT-HAP3 Transcription Factor Family AT5G47670 59.259 3.40e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops1g00424 CBFD_NFYB_HMF 1.1e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00424 K08065 - gmx:100811633 170.244