Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00420 ATGCTGCAGACATATGATCGATCGTCCATTCAAAGCTGGATGAATGAAGTTTGCGTTTGCCCTATGACCAAGCAAGTACTGTCATACTCCACCCTCGATCCTAATAGCTGCCTCCTAAACATGATTTCAATGTGGTGTGAGAAGCATGAAATTGAGCTACCAAAGCCTTTTGGGTGCATTGCTGATGAAGAAGTAATTGAAGCATACAGACGTCGTTTAAATTCATTGCTTCATAAGTTGTTATTCTCTGTTTCTGATCAGAAAAAAGCTGTGAAAGACCTTCAGCTGTTAGCAAAAACACTGACTTCATTTCGTACACTTCTTACAGGGTTAGAAGTGATTCGACAATTGCTCAGTGCATTATCAGCTGGCATAGATTATATTGACCCTGAGCTCCACGAGTGCTTGATTGCAACTGTTCTAAATTTCTCAATTAGTCGTGGTAACAAAAGAGAAATTGCAGAGGATGAAAACGTGATGTCTTTGCTTATTGATTCCTTGAAATCAGGAACCATTCAAACAAGAAGGAATGCTGCAACAATTATTTTCAAATTATCATCTCTTGATGATAACAAACACACCATTGGAAAATATGGAGCTATCAAATATTTGGTTGAACTTTTATCAGAGGAAGCCATGGAAGAAGCTGTTACAGCCATATTGGAACTATGCAAGGTGCATGAAAATATAGAAAGGGTTGTCCAAGAAGGGGCAATTCAGGTTATTCTTAGCAAGATCAGAGACCATGTTCTAGTTGATGACTTGTTGAAGGTACTGGAACTCCTCTCAAGCCATCATGAGGCTGTCAAAGGATTCAGAAATCATGGTGCTGTCCCCTTATTGCTGGATATTTTAAAGAAGAGCACTTCACAATGCAACAAAGAAAGATGTATTAGTGTCTTACATACAATCTTTACCGATGATGGAATAAAGCTGGAGGAAATTAGAGATGATGAAATAGCCATCAAATATACTGTCCAATTTTGTCCAGTGTGA 996 0.3855 MLQTYDRSSIQSWMNEVCVCPMTKQVLSYSTLDPNSCLLNMISMWCEKHEIELPKPFGCIADEEVIEAYRRRLNSLLHKLLFSVSDQKKAVKDLQLLAKTLTSFRTLLTGLEVIRQLLSALSAGIDYIDPELHECLIATVLNFSISRGNKREIAEDENVMSLLIDSLKSGTIQTRRNAATIIFKLSSLDDNKHTIGKYGAIKYLVELLSEEAMEEAVTAILELCKVHENIERVVQEGAIQVILSKIRDHVLVDDLLKVLELLSSHHEAVKGFRNHGAVPLLLDILKKSTSQCNKERCISVLHTIFTDDGIKLEEIRDDEIAIKYTVQFCPV* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00420 331 Gene3D - 72 329 IPR011989 -
Rops1g00420 331 PANTHER U BOX DOMAIN-CONTAINING 3 309 - -
Rops1g00420 331 SUPERFAMILY RING/U-box 3 56 - -
Rops1g00420 331 Pfam U-box domain 3 50 IPR003613 GO:0004842|GO:0016567
Rops1g00420 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 53 IPR013083 -
Rops1g00420 331 ProSiteProfiles U-box domain profile. 1 52 IPR003613 GO:0004842|GO:0016567
Rops1g00420 331 SUPERFAMILY ARM repeat 83 316 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00420 Rops-Chr1 11214061 11215056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00420 41 321 U-box Gene Family AT3G07360 41.379 4.34e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00420 - - gmx:100806132 310.071