Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00419 ATGGCTGCTCAAGAGGGCGATCCTATGCTAGATGGGGGTAACCACACTGTACACGATTTGACATGCAGTCCTTCGTTCTCATCAAAACTTGTTGATCTTGATGTTCCTTCATTGTTTAAATGTCCTATCTCAGGACTTTTAATAACGGACCCGATTGTCTTATCTACCACAAAGACTTACGATAGACCTTTTATTCAGGGGTGGCTAAGTGAAGTGCAACGTATTAACCCTAAGACCAAGCCTATCCTCTCTCATGCCATCCTTTTTTCTAATTACTTGGTTAAAGAAATGATTGCCGAGTGGTGCAAGGAGAAGGCATCTGCGTGGAAAGCTCAATTGGGGGCAGTGGTTCACAATATTGTGGATGACCATGACTACAAGTTTTGCGCTATCAACGAGGCTAGAGTTGCTCTCTCTGCTCTTGAGGAATTAAAATGTTGCGCTGTTGTCCCAGGCAAATCAGACCATTTATGTGTTCCTCCTCATTTCCAATGTCCCATCTCAGGATACCTAATGACGGATCCTGTGATCTTGTCTATCGGACAGGTTTCTTCATTTTCTCTCTCTATCAGAATTCTTGGATGA 585 0.4325 MAAQEGDPMLDGGNHTVHDLTCSPSFSSKLVDLDVPSLFKCPISGLLITDPIVLSTTKTYDRPFIQGWLSEVQRINPKTKPILSHAILFSNYLVKEMIAEWCKEKASAWKAQLGAVVHNIVDDHDYKFCAINEARVALSALEELKCCAVVPGKSDHLCVPPHFQCPISGYLMTDPVILSIGQVSSFSLSIRILG* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00419 194 PANTHER U BOX DOMAIN-CONTAINING 28 145 - -
Rops1g00419 194 Pfam U-box domain 35 106 IPR003613 GO:0004842|GO:0016567
Rops1g00419 194 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Rops1g00419 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 116 IPR013083 -
Rops1g00419 194 SUPERFAMILY RING/U-box 28 106 - -
Rops1g00419 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 185 IPR013083 -
Rops1g00419 194 SUPERFAMILY RING/U-box 158 179 - -
Rops1g00419 194 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00419 Rops-Chr1 11212553 11213779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00419 24 103 U-box Gene Family AT3G54850 41.667 1.21e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00419 - - cave:132170746 100.523