Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00415 ATGTCTCTGACTTCCAAGGTTGTGCCTGCTCTCCAGCCTATCAGATCGTTGCCTCCTCATTTCAAGGTTGCTGGTAACCTGACCCCTGATCTCATGGAAAACCATGGAGATGCTAAATTGAGAAGCTCTGGTGTGAGTGGATCAAGTAGTCCTGAAAATGATGCTTCTGAGGAAGCTCTGCACCGTGCAGGTGACATGGGTCTTTTTGATGAGGATTTGGCATACAGTAGAAAAGGTGTATCGTTAGAGGACAGGCCATCAATTGCTGATGAAGACTTAGAATCTGTTCCTCTGCCCTTCCCATCAATTTCGATGTCCTCTAGGGAACGAAGGTGGGGTGATACAACAGCTTATGCTCCAAAGAAGAAGCTTCATTCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTGGCAAAGATAATAACAACTTCTGGAAATGAATCTGTCATTTCACTGCCTGATGGGAAGGTTTTGAAAGTGAAAGAAGAAAGTTTGGTATCAGCAAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAACGAACCATCAGTTTTATACAATCTGCAACATAGATACAATCAAAATATGATTTATACGAAAGCGGGGCCTGTTTTGGTTGCTATAAATCCCTTCAAGAAAGTTCCTTTGTATGGTAATGATTATATTGAAGCCTACAAGTGTAAAGCAATTGAAAGCCCTCATGTATATGCAATTACAGACACAGCCATCCGAGAAATGATACGAGATGAAGTTAATCAATCTATAATTATAAGTGGGGAGAGTGGAGCTGGAAAGACCGAGACAGCAAAGATAGCAATGCAGTACTTGGCTGCCCTTGGTGGTGGAAGTGGAATAGAGTATGAGATATTAAAGACTAATCCAATACTAGAAGCCTTTGGTAATGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATTTCCGGTGCTAATATTCAAACATTTTTGCTGGAAAAGTCTAGAGTGGTCCAATGCAATGAAGGGGAAAGGTCATATCATATATTTTATCAGCTATGCGCTGGTGCACCACCATCTCTCAGGGGGAAGCTAAACCTAAGGAATGCAGAAGACTATAAATATTTAAGGCAGAGCAATTGTTATTCAATTACTGGTGTTAATGATGCAGAAGAATTTTGCATAGTCCTGGAAGCTCTTGATGTTGTCCACATTAGTAAAGAAGACCAAGAAACTGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGAAACATATCATTTACTGTGATTGATAATGAAAACCATGTTCAAGCTGAAGAAAATGAGGGTCTGTTCCACGTTGCCAAATTGATTGGCTGTGACATTGAAGATCTCAAGTTGACTCTATCAACTCGCAAAATGAAAGTTGGTAATGATAATATTGTCCAAATGTTGACGCTATCACAGGCAATTGATGCAAGAGATGCTTTGGCCAAGTCAATATATGCATGCCTTTTTGATTGGTTGGTTGAACAAATAAATAAATCACTTGCTGTTGGCAAAAGACGTACTGGCAGATCAATCAGTATACTGGATATATATGGCTTTGAATCATTCAATAGGAACAGTTTTGAACAGTTCTGCATAAATTATGCAAATGAAAGATTACAGCAACACTTCAATCGTCACTTATTCAAGTTAGAGCAGGAGGAATATATACAAGATGGCATTGACTGGGCTAAAGTTGAATTTGAAGACAATCAAGACTGCCTTAATCTTTTTGAGAAGAGGCCACTGGGGTTATTATCCCTGTTAGATGAAGAGTCCACTTTTCCAAATGGCACAGATTTAACATTTGCTAACAAGCTTAAACAGCATTTGAATTCTAAGTCATGTTTCAAAGGAGAAAGGGACCAAGCCTTTACTGTGTGTCATTATGCCGGAGAGGTCACCTATGATGCAACTGGATTTCTGGAGAAGAACAGGGACCTATTGCACTTGGATTCCATCCAACTTCTATCATCATGCACATGTCATCTTCCTCAAGTATTTGCATCCCATATGCTGACTCAGTCTGATAAGCCGGTAGTTGGTCCCTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCAACAAAATTCAAGGGTCAATTGTTCCAACTGATGCAACGTTTAGAGAGCACAACTCCACATTTTATTCGCTGCATTAAACCCAATAATCTCCAATCACCTGAATCATATGAGCAAGGGCTTGTACTGCAACAGCTGAGATGCTGTGGGGTCCTTGAAGTGGTTCGAATATCAAGATCAGGCTTTCCAACAAGAATGTCTCACCAAAAATTTGCCAGAAGATATGATTTTCTTCTCCTTGATAATGTTGCATCTCAGGATCCACTTAGCGTTTCAGTTGCAATTCTTCATCAGTTTAATATTTTGCCCGAGATGTATCAAGTTGGCTACACAAAATTATTTTTCCGAACAGGGCAGATTGGTATGCTTGAAGATACTAGAAATCGTACCCTTCATGGCATTTTACGTGTCCAAAGTTGCTTTAGGGGTTACCGAGCTCGTCGTTCTCTCAAGGAGTTTCGGGGAGGAATCACTACTCTGCAGTCATTTATCAGGGGAGAAAAAACCAGAAGGGCATATGCAGCTTTACTTCAGAGACATAGAGCTGCTGTTACTATACAGAAACGGACAAAAGCAGTATTGGTAAGAAACAGAACAAGGACTATTCGCGATGCTGCAATTGTCATACAATCAGTTATTCATGGATGGTTGGTCAGAAGATGCTCAGGGGATATTGGATTTTTGAAAGCTGGAGACGTGAAGACAAAAGAGTCAGATGAGGTTCTGGTCAAGTCATCTTTCCTGGCTGAATTACAGCGCCGGGTGCTTAGGGCTGAAGCTGCCCTGAGAGAAAAAGAAGAGGAAAATGACATCCTTAACCAACGTCTCCAACAATATGAGAGCAGATGGTCTGAGTATGAATTAAAGATGAAATCCATGGAAGAAGTGTGGCAGAAACAAATGAGATCCCTACAATCTAGCCTTTCCATTGCAAAGAAGAGCCTCGCTATCGATGACTCTGAAAGAAATTCAGATGCATCTGTTAATGCAAGTGATGAGAGGGATCACAGCTGGGATGTGGGAAGTAATCACAGGCGCCAAGAAAGCAATGGGGCAAGATCAACTAGTGCTGGTTTGAGTGTTATAAGTCGACTAGCTGAAGAATTCGAGCAGAGGAGTCAAGTATTAGGTGATGATGCTAAGTTCTTGGTTGAGGTAAAATCTGGTCAAGTGGAAGCAAGTTTGAACCCAGATCAAGAGCTTCGAAGGTTAAAACAGATGTTTGAAGCTTGGAAAAAGGATTATGGGGCAAGGCTGCGTGAAACAAAGGTGATTTTAAATAAACTTGGAAGTGAAGATGGTGCACTTGAGAAAGCGAAGAAGTGGTGGGGAAGAAGGAACAGTACAAGGATAAATTGA 3513 0.4073 MSLTSKVVPALQPIRSLPPHFKVAGNLTPDLMENHGDAKLRSSGVSGSSSPENDASEEALHRAGDMGLFDEDLAYSRKGVSLEDRPSIADEDLESVPLPFPSISMSSRERRWGDTTAYAPKKKLHSWFQLPNGNWELAKIITTSGNESVISLPDGKVLKVKEESLVSANPDILDGVDDLMQLSYLNEPSVLYNLQHRYNQNMIYTKAGPVLVAINPFKKVPLYGNDYIEAYKCKAIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPPSLRGKLNLRNAEDYKYLRQSNCYSITGVNDAEEFCIVLEALDVVHISKEDQETVFAMLAAVLWLGNISFTVIDNENHVQAEENEGLFHVAKLIGCDIEDLKLTLSTRKMKVGNDNIVQMLTLSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKRPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSKSCFKGERDQAFTVCHYAGEVTYDATGFLEKNRDLLHLDSIQLLSSCTCHLPQVFASHMLTQSDKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPESYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYDFLLLDNVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGMLEDTRNRTLHGILRVQSCFRGYRARRSLKEFRGGITTLQSFIRGEKTRRAYAALLQRHRAAVTIQKRTKAVLVRNRTRTIRDAAIVIQSVIHGWLVRRCSGDIGFLKAGDVKTKESDEVLVKSSFLAELQRRVLRAEAALREKEEENDILNQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDERDHSWDVGSNHRRQESNGARSTSAGLSVISRLAEEFEQRSQVLGDDAKFLVEVKSGQVEASLNPDQELRRLKQMFEAWKKDYGARLRETKVILNKLGSEDGALEKAKKWWGRRNSTRIN* 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00415 1170 Gene3D Myosin VI head, motor domain, U50 subdomain 417 714 - -
Rops1g00415 1170 ProSiteProfiles IQ motif profile. 850 877 IPR000048 GO:0005515
Rops1g00415 1170 ProSiteProfiles Myosin motor domain profile. 174 846 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00415 1170 MobiDBLite consensus disorder prediction 1039 1074 - -
Rops1g00415 1170 FunFam Myosin heavy chain 356 412 - -
Rops1g00415 1170 PANTHER MYOSIN 168 1162 - -
Rops1g00415 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 893 IPR027417 -
Rops1g00415 1170 Gene3D Kinesin motor domain 177 775 IPR036961 -
Rops1g00415 1170 Gene3D - 899 940 - -
Rops1g00415 1170 Gene3D - 850 898 - -
Rops1g00415 1170 Gene3D - 779 847 - -
Rops1g00415 1170 ProSiteProfiles IQ motif profile. 897 923 IPR000048 GO:0005515
Rops1g00415 1170 MobiDBLite consensus disorder prediction 29 58 - -
Rops1g00415 1170 SMART iq_5 919 941 IPR000048 GO:0005515
Rops1g00415 1170 SMART iq_5 847 869 IPR000048 GO:0005515
Rops1g00415 1170 SMART iq_5 896 918 IPR000048 GO:0005515
Rops1g00415 1170 SMART iq_5 870 892 IPR000048 GO:0005515
Rops1g00415 1170 Gene3D - 542 736 - -
Rops1g00415 1170 Pfam IQ calmodulin-binding motif 852 869 IPR000048 GO:0005515
Rops1g00415 1170 Pfam IQ calmodulin-binding motif 875 891 IPR000048 GO:0005515
Rops1g00415 1170 Pfam IQ calmodulin-binding motif 921 938 IPR000048 GO:0005515
Rops1g00415 1170 PRINTS Myosin heavy chain signature 532 560 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00415 1170 PRINTS Myosin heavy chain signature 585 613 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00415 1170 PRINTS Myosin heavy chain signature 258 283 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00415 1170 PRINTS Myosin heavy chain signature 204 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00415 1170 PRINTS Myosin heavy chain signature 300 327 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00415 1170 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 121 170 IPR004009 GO:0003774|GO:0005524|GO:0016459
Rops1g00415 1170 SMART MYSc_2a 168 847 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00415 1170 FunFam Unconventional myosin-XIX 544 736 - -
Rops1g00415 1170 ProSiteProfiles IQ motif profile. 872 900 IPR000048 GO:0005515
Rops1g00415 1170 CDD MYSc_Myo8 188 834 IPR036022 -
Rops1g00415 1170 Pfam Myosin head (motor domain) 176 834 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00415 1170 Gene3D - 356 415 - -
Rops1g00415 1170 MobiDBLite consensus disorder prediction 1039 1061 - -
Rops1g00415 1170 Coils Coil 966 1014 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00415 Rops-Chr1 11019619 11035379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00415 3 1168 Myosins gene family AT1G50360 74.339 0.0 1778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00415 - K10357 gmx:100781736 2100.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g00415 1 11019619 11035379 Rops1g00415 1 11019619 11035379 ECH