Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00413 ATGTGCCAGGTAGCGCAGAAGGTGATGGTGCCAGCATCACTGGAGGTGGGTTTCTATAGCTCCACATGTCCATCTGCTGAGGCAATAGTGAGAAGCACAGTGAACAAAGCGGTTTCTGTCAACCCTGGCGTAGCTGCTGGCTTGATTAGAATGCATTTCCATGATTGCTTTGTGAGGGGTTGTGATGCTTCTGTGTTATTGGCATCTGTGCCGGGTAATCCAATTGCTGAGAGAGACAATTTCATCAACAATCCAAGCTTAGGTGGCTTCGAGGTGATTGAGGAGGCTAAGACTCAAATAGAAGCTGCATGTCCTAAAACAGTATCATGTGCTGACATTCTGGCCTTTGCAGCAAGAGACAGTGCTCTCAAAGTTGGTGGCATAAACTATGAGGTACCATCAGGACGCAGAGATGGTCGTGTCTCTATTGGTGATGAAGTTCCACAGAATGTTCCTGCACCAACCCTGAATGGTGATGGACTTGTTAGCAACTTTGCAAGAAAAGGGTTGTCAGCAGATGAAATGGTGACCCTTTCAGGAGCTCATTCAATAGGTGTATCACATTGTTCCTCTTTCACAAACCGACTATACTCTTTCAATGACACACATTCTCAAGACCCTTCCATGGACCCTTCATTTGCTGCATCATTGAAAGAAAAGTGTCCACCACCACCGAGCAACACAGACCCAACAGTGGATCTTGATGTTGCCACCCCTATTCGTTTGGACAACAACTATTATGAGGGACTCATCAACCATCGTGGCTTGTTGACCTCTGATCAGACCTTGTTGACCACCCAATCAACACAGAAAATGGTTTTGAGCAATGCTAATTATGGTGCAAGTTGGGCTGTGAAGTTTGCTGAGGCAATGGTGCACATGGGTTCCATAGATGTGCTCACTGGCTATGATGGTGAGATCAGGGAGCATTGCAGCTTTGTCAATTAA 948 0.462 MCQVAQKVMVPASLEVGFYSSTCPSAEAIVRSTVNKAVSVNPGVAAGLIRMHFHDCFVRGCDASVLLASVPGNPIAERDNFINNPSLGGFEVIEEAKTQIEAACPKTVSCADILAFAARDSALKVGGINYEVPSGRRDGRVSIGDEVPQNVPAPTLNGDGLVSNFARKGLSADEMVTLSGAHSIGVSHCSSFTNRLYSFNDTHSQDPSMDPSFAASLKEKCPPPPSNTDPTVDLDVATPIRLDNNYYEGLINHRGLLTSDQTLLTTQSTQKMVLSNANYGASWAVKFAEAMVHMGSIDVLTGYDGEIREHCSFVN* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00413 315 CDD secretory_peroxidase 14 314 IPR033905 GO:0004601|GO:0042744
Rops1g00413 315 FunFam Peroxidase 17 160 - -
Rops1g00413 315 Gene3D Peroxidase, domain 2 152 294 - -
Rops1g00413 315 ProSitePatterns Peroxidases proximal heme-ligand signature. 174 184 IPR019793 -
Rops1g00413 315 Pfam Peroxidase 30 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 FunFam Peroxidase 152 294 - -
Rops1g00413 315 PANTHER PEROXIDASE 25-RELATED 16 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 Gene3D - 17 315 - -
Rops1g00413 315 ProSiteProfiles Plant heme peroxidase family profile. 13 315 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 ProSitePatterns Peroxidases active site signature. 45 56 IPR019794 GO:0004601
Rops1g00413 315 PRINTS Haem peroxidase superfamily signature 126 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 PRINTS Haem peroxidase superfamily signature 45 59 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 PRINTS Haem peroxidase superfamily signature 174 189 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 PRINTS Haem peroxidase superfamily signature 108 125 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 PRINTS Plant peroxidase signature 289 302 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 PRINTS Plant peroxidase signature 173 185 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 PRINTS Plant peroxidase signature 107 117 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 PRINTS Plant peroxidase signature 249 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 PRINTS Plant peroxidase signature 47 67 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 PRINTS Plant peroxidase signature 23 42 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 PRINTS Plant peroxidase signature 88 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 PRINTS Plant peroxidase signature 126 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 PRINTS Plant peroxidase signature 233 248 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00413 315 SUPERFAMILY Heme-dependent peroxidases 14 315 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00413 Rops-Chr1 10979816 10981540 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00413 10 315 Peroxidase AT1G05260 46.624 1.02e-89 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00413 K00430 - gmx:100786791 491.5