Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00412 ATGTCTAACTGTGAGGGAACAACAACAACAACTAACGGCGTGACTAACGGCTCAATGACGGAGTCACAGGCAACACGGCAACAACAGTGTCTCGCTGTGAAGAAACCGCCATCGAAGGACCGTCACAACAAGGTGGACGGTCGTGGACGCCGCATTCGCATGCCGATAATATGCGCCGCACGTGTGTTCCAGCTCACACGTGAGCTCGGCCACAAGTCCAACGGTCAAACCATCGAGTGGCTCCTCCAGCAAGCCGAGCCATCCATCATCGCCGCCACCGGCACCGCCTCCTTCTCCACCCTCTCCGACCATAACCAGCCCTTCATCCTCGGAAAGCGATTACGTCCCGACCACGACGCCGTCGGACCTCCCTCCGCCCTCTGGGCCCTTCCGGCCAGGTCAGACTCCGGTCAGTACTGGAGCCTCGCCGCCTCACCACCGGAACTCGTGTCGGTTTCGCCGCAACAATATCAAGCCGCCATGGGAGAGGCTTCGGCGGCGAGGCTGGGGAATTACCTTCCGGGACATCTGAATTTGCTGGCTTCATTGTCCGGTGGCTATGGCCGAAGAGACGACGAGCCTCGTTGA 588 0.5986 MSNCEGTTTTTNGVTNGSMTESQATRQQQCLAVKKPPSKDRHNKVDGRGRRIRMPIICAARVFQLTRELGHKSNGQTIEWLLQQAEPSIIAATGTASFSTLSDHNQPFILGKRLRPDHDAVGPPSALWALPARSDSGQYWSLAASPPELVSVSPQQYQAAMGEASAARLGNYLPGHLNLLASLSGGYGRRDDEPR* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00412 195 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 101 IPR005333 GO:0003700
Rops1g00412 195 MobiDBLite consensus disorder prediction 1 49 - -
Rops1g00412 195 Pfam TCP family transcription factor 38 102 IPR017887 -
Rops1g00412 195 MobiDBLite consensus disorder prediction 35 49 - -
Rops1g00412 195 ProSiteProfiles TCP domain profile. 38 92 IPR017887 -
Rops1g00412 195 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00412 Rops-Chr1 10976675 10978108 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00412 15 195 TCP Transcription Factor Family AT5G23280 56.596 7.21e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops1g00412 TCP 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00412 K16221 - gmx:100795254 256.144