Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00409 ATGTGTAGGTGGGTAACGTGCATGAGTAAGGAATATATTGTGAAAGATGTTGAGGTTGGAGTCGTGTGGGGCGAAGATGATGGAGCAGGCATATGTGTTGAAAGGCAAGTCACTGAAGCAGGCATATGTGTTGAAAGGCAAGTCACTGGAGCAGAATGGTATAAGGAGCAGACATTTGTGTTGAAGGGCAAGTTGCAGGAGCTGGTTAAGACCATCGTAGACGGCGATGACTTCAGACTGCGTGTTGCTGATGAGGCTAGTGTTGTTCTTTCTACTCTCATGGATCTGAAATGCAGCACCATTGTCCCCGGCGAATTAAAGCAGTTACCTATTCCTCCTCTGTTTCAATGTCCCATCTCAGGATATTTAATGACAGACCCTGTTATCTTGACCGCTCAACAGGCTTATGATCGACCATCCATTCAAAGGTGGCTGGATGAAGTCCAAAGTATTTGCCCGGAGACCAAACAAATCCTCTCTCACACTATCCTTTGTCCTGATTACTTGCTTCTAGACAAGATTTCAATGTGGTGTGAGAAGTGTAAAATTGAGCTACCAAAGCCTCTTCGGTACTATGATGAAGAAGAAGTTGACCTTATATTGCAGAAGTCTGGCCTTCAGCCAGTCAATATGAACCTGTCTCCTAGCACAAGTGGTATATAG 663 0.448 MCRWVTCMSKEYIVKDVEVGVVWGEDDGAGICVERQVTEAGICVERQVTGAEWYKEQTFVLKGKLQELVKTIVDGDDFRLRVADEASVVLSTLMDLKCSTIVPGELKQLPIPPLFQCPISGYLMTDPVILTAQQAYDRPSIQRWLDEVQSICPETKQILSHTILCPDYLLLDKISMWCEKCKIELPKPLRYYDEEEVDLILQKSGLQPVNMNLSPSTSGI* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00409 220 PANTHER U BOX DOMAIN-CONTAINING 81 188 - -
Rops1g00409 220 SUPERFAMILY RING/U-box 107 188 - -
Rops1g00409 220 Pfam U-box domain 111 180 IPR003613 GO:0004842|GO:0016567
Rops1g00409 220 SMART Ubox_2 114 177 IPR003613 GO:0004842|GO:0016567
Rops1g00409 220 ProSiteProfiles U-box domain profile. 110 184 IPR003613 GO:0004842|GO:0016567
Rops1g00409 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 185 IPR013083 -
Rops1g00409 220 CDD RING-Ubox_PUB 112 164 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00409 Rops-Chr1 10944771 10946980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00409 111 187 U-box Gene Family AT3G54850 49.351 5.42e-21 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00409 - - gmx:100806132 149.058