Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00406 ATGGAGAGTACTCCACTCATGCATCAAATAGTTTCTTGCTTGGTCCTGATTTTATGTTTTTCTTCATTGGCATCAGCATCTCTGAAGGTGGGTTTCTATAGCTCCACATGTCCATCTGCTGAGACAATTGTGAGAAGCACAGTGAACAAAGCAGTTTCTGTCAACCCTGGCATAGCTGCTGGTTTGATTAGAATGCATTTCCATGATTGCTTTGTGAGGGGTTGTGATGCTTCTGTGTTATTGACATCAACACCGGGTAACCCAATTGCTGAGAGAGACAATTTCATCAACAATCCAAGCTTACATGGCTTCGAGGTGATTGAGGAGGCTAAGACTCAAATAGAAGCTGCATGTCCTCAAACAGTATCATGTGCTGACATTCTGGCCTTTGCAGCAAGAGACGGTGCTCTCAAAGTTGGTGGCATAAACTATGAGGTACCATCAGGACGCAGAGATGGTCGTGTCTCTATTGGTGATGAAGTTCCACAGAATGTTCCTGCACCAACCCTGAATGGTGATGAACTTGTTAGCAACTTTGCAAGAAAAGGGTTGTCAGCAGATGAAATGGTGACCATTTCAGGAGCTCATTCAATAGGTGTATCACATTGTTCCTCTTTCTCAAACCGACTATACTCTTTCAATGACACACATACTCAAGACCCTTCCATGGACCCTTCATTTGCTGCATCATTGAAAGAAAAGTGTCCACCACCACCGAGCAACACAGACCCAACAGTGGATCTTGATGTTGCCACCCCTATTCGTTTGGACAACAACTATTATGAGGGACTCATCAACCATCGTGGCTTGTTGACCTCTGATCAGACCTTGTTGACTACCCAATCAACACAGCAAATGGTTTTGAGCAATGCTAATTATGGTGCAAGTTGGGCAGTGAAGTTTGCTGAGGCAATGGTGCACATGGGTTCCATAGATGTGCTCACTGGCTATGATGGTGAGATCAGGGAGCATTGCAGCTTTGTCAATTAA 990 0.4444 MESTPLMHQIVSCLVLILCFSSLASASLKVGFYSSTCPSAETIVRSTVNKAVSVNPGIAAGLIRMHFHDCFVRGCDASVLLTSTPGNPIAERDNFINNPSLHGFEVIEEAKTQIEAACPQTVSCADILAFAARDGALKVGGINYEVPSGRRDGRVSIGDEVPQNVPAPTLNGDELVSNFARKGLSADEMVTISGAHSIGVSHCSSFSNRLYSFNDTHTQDPSMDPSFAASLKEKCPPPPSNTDPTVDLDVATPIRLDNNYYEGLINHRGLLTSDQTLLTTQSTQQMVLSNANYGASWAVKFAEAMVHMGSIDVLTGYDGEIREHCSFVN* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00406 329 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 ProSiteProfiles Plant heme peroxidase family profile. 27 329 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 FunFam Peroxidase 31 174 - -
Rops1g00406 329 CDD secretory_peroxidase 28 328 IPR033905 GO:0004601|GO:0042744
Rops1g00406 329 Gene3D Peroxidase, domain 2 166 308 - -
Rops1g00406 329 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 SUPERFAMILY Heme-dependent peroxidases 28 329 IPR010255 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 PANTHER PEROXIDASE 25-RELATED 18 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 FunFam Peroxidase 166 308 - -
Rops1g00406 329 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Rops1g00406 329 Pfam Peroxidase 44 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g00406 329 Gene3D - 31 329 - -
Rops1g00406 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00406 Rops-Chr1 10910136 10911232 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00406 12 329 Peroxidase AT5G17820 44.654 9.07e-90 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00406 K00430 - gmx:100786791 517.309