Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00404 ATGTCTAACTGTGAGGGAACAACAACAACTAACGGCGTGAGTAACGGCTCAATGACGGAGTCACAGGCAACACGGCAGCAACAGTGTCTCGCTGTGAAGAAACCGCCATCGAAGGACCGTCACAACAAGGTGGACGGTCGTGGACGCCGCATTCGCATGCCGATAATATGCGCCGCACGTGTGTTCCAGCTCACACGTGAGCTCGGCCACAAGTCCGAAGGTCAAACCATCGAGTGGCTCCTCCGGCAAGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGCCTCCTTCTCCACCCTCTCCGACCACAACAAGCCCTTCATTCTCGGAAAGCCATTACGTCCCGACCACGACGCCGTCGGACCTCCCTCTCCCGCCGCACTCTGGGCCCTTCCGGCCAGGTCAGACTCCGGTCAGTACTGGAGCCTCGCCGCCTCACCACCGGAACTCGTGTCGGTTTCGCCTCAACAATATCAAGCCGCCATGGGAGAGGCTTCGGCGGCGAGGCTGGGGAATTACCTTCCGGGACATCTGAATTTGCTGGCTTCATTGTCCGGTGGCTATGGCCGAAGAGACGACGAGCCTCGTTGA 591 0.6024 MSNCEGTTTTNGVSNGSMTESQATRQQQCLAVKKPPSKDRHNKVDGRGRRIRMPIICAARVFQLTRELGHKSEGQTIEWLLRQAEPSIIAATGTASFSTLSDHNKPFILGKPLRPDHDAVGPPSPAALWALPARSDSGQYWSLAASPPELVSVSPQQYQAAMGEASAARLGNYLPGHLNLLASLSGGYGRRDDEPR* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00404 196 MobiDBLite consensus disorder prediction 1 47 - -
Rops1g00404 196 MobiDBLite consensus disorder prediction 1 31 - -
Rops1g00404 196 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 25 101 IPR005333 GO:0003700
Rops1g00404 196 ProSiteProfiles TCP domain profile. 37 91 IPR017887 -
Rops1g00404 196 Pfam TCP family transcription factor 37 100 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00404 Rops-Chr1 10897819 10899382 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00404 14 196 TCP Transcription Factor Family AT5G23280 57.447 4.79e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops1g00404 TCP 8.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00404 K16221 - gmx:100795254 256.144