Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00402 ATGCTTCCAAAGCTAAACAAAACAATTAAGACACATAAAAAAGTCACAATGATGTTAAATTTCCATGAACTGTGGAAGCCAGTTTTTGTTATGATTTTAGTTAATTTAGCTATGGCTTTTGTTAATGTATTTCTGAAGAAGGTTCTTAATGAAGGAATGGACCACCTGACCATTGTAACTTATAGACAGGCAATTTCAGCCATTTTCTTGGCACCTATTGCTTGCTTCTATGAAAGGAAAAGGAAGCTGGAGGGACACATAATATGTCTTCTTTTCCTAAGTGCTCTTGTTGGAGTAACACTCACTCAATATCTCTATCTAATTGGACTTGAATATACATCTGCCACATTCTCCTGTGCATTCCTCAACATGGTGCCTGTATTCACCTTCATTATGGCCCTGCCTTTGGGGATGGAGAAGGTAAGCATGAAAAGCAAGAGTACTAAAGCCAAGGTCTTGGGAACTATTGTGTGTATTGGAGGAGCTTTGTTATTGATCCTTTATAAAGGAATGCCCTTAATCAACCCACATTCTCAGAACACAGCATTCAAAGCCACAACAACACCATCAGCCTCCAAGTTAAAGAAATGGATTATAGGTTCAATATTTTTGACTGCAGGCTGCCTCTTCTGGTCTTCATGGTTTCTTATACAAGCAAGGATTAGCAAAAAGTATCCATGTCAATACTCTAGCACAGCCATTTTGTCACTCTTTGCTGCCATTCAATCAGCATTATTAAATTTGATCATCCATAGAGATAATGCCAAATGGGTTCTCAAAGGAAATTTTGAAGTAATGACTGTCATATATGCTGGGCTGGTGGGATCAGGCTTGTGCTTTGTGGCAATGTCATGGTGTGTCAAACAAAGGGGTCCAGTGTTTACTGTAGCATTTACCCCTCTTATACAGATGTTTGTGGCCGTGCTTGATCTCTCTATATTACAGGAGGGAATTTATTTGGGAAGTGTTGTGGGATCAGTCTTGGTTATTGCTGGCACTTATATTCTCCTATGGGGTAAAAGTAAAGAGGAAGAACAATATGCTTTGAAGGATATCCAAGACACTCAAGAAGATGAAGAATGTCACTAG 1089 0.3893 MLPKLNKTIKTHKKVTMMLNFHELWKPVFVMILVNLAMAFVNVFLKKVLNEGMDHLTIVTYRQAISAIFLAPIACFYERKRKLEGHIICLLFLSALVGVTLTQYLYLIGLEYTSATFSCAFLNMVPVFTFIMALPLGMEKVSMKSKSTKAKVLGTIVCIGGALLLILYKGMPLINPHSQNTAFKATTTPSASKLKKWIIGSIFLTAGCLFWSSWFLIQARISKKYPCQYSSTAILSLFAAIQSALLNLIIHRDNAKWVLKGNFEVMTVIYAGLVGSGLCFVAMSWCVKQRGPVFTVAFTPLIQMFVAVLDLSILQEGIYLGSVVGSVLVIAGTYILLWGKSKEEEQYALKDIQDTQEDEECH* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00402 362 Pfam EamA-like transporter family 199 337 IPR000620 GO:0016020
Rops1g00402 362 Pfam EamA-like transporter family 26 166 IPR000620 GO:0016020
Rops1g00402 362 PANTHER WAT1-RELATED PROTEIN 27 351 IPR030184 GO:0016020|GO:0022857
Rops1g00402 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 266 342 - -
Rops1g00402 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 61 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00402 Rops-Chr1 10856379 10860113 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00402 25 345 Nodulin-like Gene Family AT1G11460 41.358 4.92e-86 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00402 - - gmx:100794199 573.548