Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00396 ATGGAAGAAGAGGGAACTTCTGAGATCGATAGGCACAAAATCCGCAACATATGCATCCTCGCACACGTCGACCACGGCAAGACCACGCTCGCCGACCAGCTCATCGCTACCGCCGGCGGTGGCGTTGTCCACCCGAAAGTCGCCGGTCGGATCAGGTTCATGGATTACCTCGACGAAGAACAACGTAGAGCCATAACCATGAAGAGCTCCTCCATCGCACTTCGTTACAACCACCACATCGTTAACCTCATCGATTCCCCCGGCCACATCGATTTCTGCGGCGAGGTCTCCACCGCCGCACGTCTCTCTGACGGCGCACTCCTCCTCGTCGACGCCGTGGAAGGTGTCCACATCCAAACCCACGCCGTCCTCCGCCAATGCTGGATCGAACGCCTCTCACCTTGCCTCGTCCTCAACAAGATGGATCGTTTGATCACCGAGTTGAAACTCACTCCCTTTGAAGCCTACACTCGCCTTTCTAGAATCGTCCATGAAGTTAACGGCATCGTGAGTGCTTATAAATCGCAGAAATACCTTACCGATGTCGATTCCCTCCTCGCCGGCACCAATTCCAGTGAAAACCTCGATGATTACGATGATAATGAAGATACGTTTCAGCCGCAGAAGGGGAATGTGGTCTTTGCATGTGCATTGGATGGTTGGGGGTTTGGGATTCAAGAGTTTGCTGAGATTTATGCTTCTAAGTTAGGTGCTAGTGTTGGTGCATTGTTGAAAGCTTTGTGGGGTCCACGGTATTTTAACCCTAAGACTAAGATGATTGTTGGGAAGAAAGGGATTGGTAGTGGTAAGGCTAAGCCTAAGCCTATGTTTGTTCAGTTTGTGTTGGAGCCATTGTGGCAGGTTTATCAGGGTGCTTTGGATGGGGATAGAGGGTTGCTTGATAAGGTTATTAAGTCGTTTAATTTGCAGGTTCCGGCGAGGGAGTTGCATAATAAGGATGCTAAGGTTGTGCTTCAGGCTGTCATGAGTCGTTGGCTTCCTCTTTCGGATGCCATTTTGTCTATGGTGGTTAAGTGTCTGCCGGACCCTGTTTCGGCGCAGGCATTTAGGATATGGCGGTTGATTCCGGAGCGTGAGGTTAATGCTGCCGGGGATGGGGTTGATAGAAGTGTGGTGGAGGAGGCGGAGTTTGCGAGGAAATCGGTGGAGGGGTGTGATTGGGGGGCTGAGGTTCCTTTTGTTGCATTTGTGGCTAAGATGTTTGCTGTACCGGTTAAATTGCTTCCTCCTTCCCAAGGGGGGGAGGTTGTGGGAAATGGTGGTGATGAAGGAGAGGGTGAGTCAGATGAGTGTTTCTTGGCTTTTGCTAGGATATTTAGTGGGGTTTTGTCTGTGGGGCAAAGAGTTTTTGTGCTTTCTGCTTTGTATGATCCATTGAAAGGGGAATCAATGCAAAAGCATATACAGGAGGCTGAAATGAAATCCCTGTATCTGATGATGGGGCAAGGGTTGAAAGTAGTGACATCTGCTAAAGCAGGAGATATTGTTGCTATCCGAGGACTTAGCCAGCAAATATTGAAAAGTGCTACCCTTTCCTCTACTCGGAACTGTTGGCCTTTTTCAAGTATGTCATTCCAAGTTTCCCCGACTTTGAGAGTTGCAATTGAGCCATCTGACCCTGCAGAAATGGGCGCGTTACTCAAAGGTTTAAGGCTTCTGAATCGAGCTGACCCATTTGTTGAGGTCACGGTTTCTGCTAGAGGAGAGCATGTTCTTGCTGCAGCTGGTGAAGTTCATCTTGAGAGATGCATAAAGGACTTGAAGGATAGGTTCGCGAAAGTAAGCTTGGAAGTCTCTCCACCCCTTGTGTCCTACAAAGAGACCATTGAGGGAGAGGTCTCCAATGTGCTGGAAAATTTGAAAGTTCTTAGTAGGAGGAGCTCAGATTATGTCGAGAAAACAACACCAAATGGAAGATGTGTTGTTCGTGTACAGGTGATGAAACTTCTACCTGCTCTTACGAAGGTGCTAGATGAAAGCTCTGATCTTCTTGGAGATGTCATTGGAGTAAGGTCAGGGCAGACAGCTAAAAATTTGGAAATCCAAAGACCTAGCAGTAGTATTCTCGAGAATGAGAGTCCAGCTGAAGTGCTAAAAAAACACATAATGGATGCAGTGGAGAGTGATATTTTGAGCAGGCATGAAAATGACAAGGACCATGCCGAGAAATGTAAATTGAAGTGGCTAAAGCTTTTGAGGAGGATATGGGCACTTGGACCAAGGCAGATTGGTGCTAACCTTCTCATTACTCCTGATATTAAAGCAGAAAGTACTGATACTTCTGTTCTAATACGTGGTTGCTCTCATGTATCTGAAAGGTTGGGCTTTGTCTCTGATTCTAGTAACAGTAACTCAATATCTGAGACATCTTCAAATGAGAGCCAAGCTTTGTACATGGATGCCGAGCGTCTTGAGAGTAGTGTTATAACTGGGTTCCAACTAGCCACTTCAGCTGGACCCTTGTGTGATGAACCTATGTGGGGATTGGCATTTGTTGTCGAAGCACGTATATCTCCATGTTCTGGGCAGTATGATGAATCTGAAACACACCAACAATCTGAACAGCACGGCATCTTTGCAGGGCAGGTAATTGCAACTGTCAAGGATGCTTGTAGAGCAGCTGTGCTTCAGAATAAGCCACGGCTTGTGGAAGCAATGTACTTTTGTGAATTGAATACCCCTACAGAATATTTGGGTCCCATGTACGCTGTACTTTCCCGAAGACGGGCCCGAGTTTTGAAGGAAGAGATGCAGGAAGGTTCCCCTTTCTTCACTGTGCATGCATATGTTCCTGTTTCTGAGAGCTTTGGTTTTGCGGATGAGCTTAGAAGGTGGACTTCTGGTGCAGCAAGTGCACTCCTTGTCCTTAGCCACTGGGAAGCACTACCTGAGGATCCTTTCTTTGTACCTAAAACAGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCTAGCGTTCTTCCGAATACAGCAAGAAAGTTAATTGACGCAGTCAGACGGCGTAAGGGCCTCCCTGTGGAGGAAAAGGTAGTACAGCATGGAACCAAGCAAAGGACACTGGCCCGCAAAGTCTGA 3093 0.4756 MEEEGTSEIDRHKIRNICILAHVDHGKTTLADQLIATAGGGVVHPKVAGRIRFMDYLDEEQRRAITMKSSSIALRYNHHIVNLIDSPGHIDFCGEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKMDRLITELKLTPFEAYTRLSRIVHEVNGIVSAYKSQKYLTDVDSLLAGTNSSENLDDYDDNEDTFQPQKGNVVFACALDGWGFGIQEFAEIYASKLGASVGALLKALWGPRYFNPKTKMIVGKKGIGSGKAKPKPMFVQFVLEPLWQVYQGALDGDRGLLDKVIKSFNLQVPARELHNKDAKVVLQAVMSRWLPLSDAILSMVVKCLPDPVSAQAFRIWRLIPEREVNAAGDGVDRSVVEEAEFARKSVEGCDWGAEVPFVAFVAKMFAVPVKLLPPSQGGEVVGNGGDEGEGESDECFLAFARIFSGVLSVGQRVFVLSALYDPLKGESMQKHIQEAEMKSLYLMMGQGLKVVTSAKAGDIVAIRGLSQQILKSATLSSTRNCWPFSSMSFQVSPTLRVAIEPSDPAEMGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFAKVSLEVSPPLVSYKETIEGEVSNVLENLKVLSRRSSDYVEKTTPNGRCVVRVQVMKLLPALTKVLDESSDLLGDVIGVRSGQTAKNLEIQRPSSSILENESPAEVLKKHIMDAVESDILSRHENDKDHAEKCKLKWLKLLRRIWALGPRQIGANLLITPDIKAESTDTSVLIRGCSHVSERLGFVSDSSNSNSISETSSNESQALYMDAERLESSVITGFQLATSAGPLCDEPMWGLAFVVEARISPCSGQYDESETHQQSEQHGIFAGQVIATVKDACRAAVLQNKPRLVEAMYFCELNTPTEYLGPMYAVLSRRRARVLKEEMQEGSPFFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEALPEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDAVRRRKGLPVEEKVVQHGTKQRTLARKV* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00396 1030 FunFam Elongation factor like GTPase 1 225 333 - -
Rops1g00396 1030 SUPERFAMILY Translation proteins 392 530 IPR009000 -
Rops1g00396 1030 FunFam Elongation factor 2-like protein 5 213 - -
Rops1g00396 1030 Gene3D - 6 213 IPR027417 -
Rops1g00396 1030 SMART EFG_C_a 888 977 IPR000640 -
Rops1g00396 1030 CDD aeEF2_snRNP_like_IV 607 895 - -
Rops1g00396 1030 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 12 240 IPR000795 GO:0003924|GO:0005525
Rops1g00396 1030 Gene3D Translation factors 350 533 - -
Rops1g00396 1030 FunFam Translation elongation factor 2 535 611 - -
Rops1g00396 1030 SUPERFAMILY EF-G C-terminal domain-like 891 989 IPR035647 -
Rops1g00396 1030 CDD EF2 15 233 - -
Rops1g00396 1030 PRINTS GTP-binding elongation factor signature 62 70 IPR000795 GO:0003924|GO:0005525
Rops1g00396 1030 PRINTS GTP-binding elongation factor signature 134 143 IPR000795 GO:0003924|GO:0005525
Rops1g00396 1030 PRINTS GTP-binding elongation factor signature 16 29 IPR000795 GO:0003924|GO:0005525
Rops1g00396 1030 PRINTS GTP-binding elongation factor signature 82 92 IPR000795 GO:0003924|GO:0005525
Rops1g00396 1030 PRINTS GTP-binding elongation factor signature 98 109 IPR000795 GO:0003924|GO:0005525
Rops1g00396 1030 Pfam Elongation factor Tu domain 2 440 518 IPR004161 GO:0005525
Rops1g00396 1030 SUPERFAMILY EF-G C-terminal domain-like 534 608 IPR035647 -
Rops1g00396 1030 Gene3D Elongation Factor G (Translational Gtpase), domain 3 535 611 - -
Rops1g00396 1030 CDD eEF2_snRNP_like_C 891 970 - -
Rops1g00396 1030 Pfam Elongation factor G C-terminus 889 973 IPR000640 -
Rops1g00396 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 348 IPR027417 -
Rops1g00396 1030 FunFam Elongation factor like GTPase 1 887 1022 - -
Rops1g00396 1030 Gene3D - 632 885 IPR014721 -
Rops1g00396 1030 CDD EF2_II 399 521 - -
Rops1g00396 1030 Gene3D Yeast translation eEF2 (G' domain) 225 333 - -
Rops1g00396 1030 Gene3D - 887 1021 - -
Rops1g00396 1030 CDD EF2_snRNP_III 536 607 - -
Rops1g00396 1030 SUPERFAMILY Ribosomal protein S5 domain 2-like 610 890 IPR020568 -
Rops1g00396 1030 Pfam Elongation factor Tu GTP binding domain 13 345 IPR000795 GO:0003924|GO:0005525
Rops1g00396 1030 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 11 1029 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00396 Rops-Chr1 10752031 10755444 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00396 8 1030 Eukaryotic Initiation Factors Gene Family AT3G22980 70.833 0.0 1452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00396 K14536 - pvu:PHAVU_003G003900g 1715.66