Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00395 ATGAAGCTTTCGTTCTCCATCCCTTCATCGAAATCGTCATCGAAGTCCCACTCCAAACCCAAACAACAACAAGAAGAAGATGACGATACCACAAAACACAAACACTTGATAACCGAATTCGACCCTTCCAAACCCCCAACCCTTCCCACTTCCAAAACCCTAATCCCCCCAATCCAAAACCAATGGACTCCCCTCAAGAAACTCAAGATGCAAAACCTCCACCTTCCCCTCACCGATCCCAACATTAATTCCCAATCCCTAGCCTTCGAACAAGACACCACCTCCGCCACCGATGTCCCCGGATCCGACATGTCCTTTGGCCTCAACCTCCGCCGCACCTCCGACAGTAAACCACCGCCCGATTCCCACCAAGATGACAACGACAACAACAACAACAACAACACTGCCTTATCGCGGCGTCCGGAGGACATGATGCTGCAGAAGCTGAAGGACGACCTGAAAAGACTGCCGGAGGATCGGGGTTTTGATGAATTTAAGAATGTCCCCGTCGAGGGCTTCGGCGCCACGCTCCTCGCCGGTTATGGCTGGTCTGAAGGGATGGGGATTGGGAAGAATGCGAAAGAGAATGTGAAGGTTTTTGAGTACAAGCGGAGGACTGCCAAGGAAGGTTTAGGTTTCGTTGGTGATGCTCCTGCTTCCCGGACCAAGGAGAAGAAGGAGGAAAAACGAGGAGGAGCAACGACGAAGAAGGAGGAGAAAATTGTTAGAATTGTTGGGGGAAGAGATGTTGGATTGAAGGGAAGTGTTGTTTCGACAATTGGGGATGATTACCTTGTGTTGAAGCTTTCCGAGAGTGGGGAGCAAGTGAAGGTGAAGGTGGATGATGTTGCTGAATTGGGTTCTAAAGAAGAAGAGAGGTGCTTGAGAAAATTGAAGGATATGAAGATTCGACGGCGGCATGATGAGGATAAAGGAGGGTCTAAGAATAAGCGTGGTAGGGATGAGATTGAAGTGAAGAAAGTGGATCGTCTAAGAGAAGAGGAAGGAAGGAAACATGTTTCTTGGCTTACAAGTCACATTAGGGTTAGGGTGATTAGCAGAGATTTGAAAGGGGGGAGGTTGTATTTGAAGAAGGGAGAGGTTTTGGATGTTGTTGGGCCTACTACTTGTGATATATCCATGGATGAGAGCAGGGAGATCATTCAAGGGGTGTCTCAAGATCTCCTCGAGACGGCTATTCCGCGACGTGGGGGACCGGTTCTTGTGTTGCATGGTAAGCATAAGGGTGCCTTTGGCAGTTTGGTTGAGAGGGATTTGGACAGGGAAATTGCCATCGTTAGGGATGCTGATACCCATGAGCTGCTCAATGTCAAGTTCGAACAAATTGCAGAGTATATTGGGGACCCAAGCTTATTGGGACATTGA 1386 0.4885 MKLSFSIPSSKSSSKSHSKPKQQQEEDDDTTKHKHLITEFDPSKPPTLPTSKTLIPPIQNQWTPLKKLKMQNLHLPLTDPNINSQSLAFEQDTTSATDVPGSDMSFGLNLRRTSDSKPPPDSHQDDNDNNNNNNTALSRRPEDMMLQKLKDDLKRLPEDRGFDEFKNVPVEGFGATLLAGYGWSEGMGIGKNAKENVKVFEYKRRTAKEGLGFVGDAPASRTKEKKEEKRGGATTKKEEKIVRIVGGRDVGLKGSVVSTIGDDYLVLKLSESGEQVKVKVDDVAELGSKEEERCLRKLKDMKIRRRHDEDKGGSKNKRGRDEIEVKKVDRLREEEGRKHVSWLTSHIRVRVISRDLKGGRLYLKKGEVLDVVGPTTCDISMDESREIIQGVSQDLLETAIPRRGGPVLVLHGKHKGAFGSLVERDLDREIAIVRDADTHELLNVKFEQIAEYIGDPSLLGH* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00395 461 MobiDBLite consensus disorder prediction 18 40 - -
Rops1g00395 461 MobiDBLite consensus disorder prediction 1 17 - -
Rops1g00395 461 MobiDBLite consensus disorder prediction 93 112 - -
Rops1g00395 461 MobiDBLite consensus disorder prediction 219 234 - -
Rops1g00395 461 SMART G-patch_5 168 214 IPR000467 GO:0003676
Rops1g00395 461 MobiDBLite consensus disorder prediction 93 143 - -
Rops1g00395 461 MobiDBLite consensus disorder prediction 213 234 - -
Rops1g00395 461 MobiDBLite consensus disorder prediction 1 58 - -
Rops1g00395 461 PANTHER G PATCH AND KOW-CONTAINING 1 457 IPR045166 GO:0000398
Rops1g00395 461 ProSiteProfiles G-patch domain profile. 170 216 IPR000467 GO:0003676
Rops1g00395 461 Gene3D - 346 400 - -
Rops1g00395 461 Pfam G-patch domain 157 213 IPR026822 -
Rops1g00395 461 MobiDBLite consensus disorder prediction 44 58 - -
Rops1g00395 461 MobiDBLite consensus disorder prediction 125 140 - -
Rops1g00395 461 SMART kow_9 235 262 IPR005824 -
Rops1g00395 461 SMART kow_9 400 427 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00395 Rops-Chr1 10744212 10745921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00395 342 434 C2H2 Transcription Factor Family AT1G55460 32.258 1.76e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00395 K13101 - gmx:100784983 520.776