Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00394 ATGGGTGCTTCAAAAGTTGCCAGATGTGGAAGAAGGAGAACAATGGTTGATAAGAGTTCAATTATTCAGCCAGCAAACAGACATATCTCACACAAATTGAGTGAATTTGATTTGGCTGATTCAGAATGGACCAATAGGATTCCAGAGTGTCCAGTATATCACCCATCAGAAGAAGAGTTTGAGCATCCTTTAGTTTATCTACAGAAGATTGGTCCTGAGGCTTATAAATATGGTATATGCAAAATTGTTTCTCCAATTGCTGCCTCTAATCCAGCTGCTTATGTCTTAATGAAAGAGAATAAGGACTTCAAGTTTGAAACAAATGTACAGCCTCTTCGGCTTTCTAAATGGAATGAGAAGGATATAATAACCTTTCCTATGAGAGGCAGAAAATATACATATCATGAATTTGAGGCTCTAGCAAACAAGGCCTTTTTCAGTAGATTTTGCAGTTCTGAAGGTCTTTCTTCTTCATATGTGGAAAAGGAGTTCTGGCATGAGATGGTGCATGGAGAGAAGGGAACAGTAGAATATGGAGTCAATGTTGAGGGCAGTGCCTTTTCATGTGATCCTGATGACAAACTTGGAACAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCTGCAGTCCCCATTTCGTTTAGTTGATAGGGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGGATGCTTTTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTATCATCACTCAGGTGCAAATAAAACTTGGTATAGCGTGCCTGGCAATGCAGCCTCTCAATTTGAAAAGACTGTCTTATATCATGTGTATTGCAATAAGAACTTAACAAAACATGGAGAGGATGGAGCTTTCAAATTTCTTGCACAGAAAACAACAATGTTCCCTCCAAATGTATTGTTACAACATGATGTAGCAGTTTACAAGGCTGTGCAGAAGCCAGGAGAGTTTGTCATCACCTTTCCTAGAGCATATCATGCTGGATTCAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTATTGGTGATTGGTTTCCACTTGGGGCAGCAGCTAGCAAACGTTATGCACATCTCAGAATGCTACCTATAATTCCATATGAGGAACTTCTTTGTAAAGAAGCAATGCTGGTTTACAAGTCCTCAAAAGTCAGAAGTTCAAGGAACAAACCTGAAAACACAACATCTTATCGTGCTATTGTACTGTCTTTCTTGCATCTTATGCAATTTTATAAGAAATCCCTTTCGCAACTGAACAGTTCAAGAAAGTTGTCAACCTCTTCAAATGTATTAGGTTCTATAAAATGCAGCCTCTGTTATAGGGATTGTTATGTAGCTTACTTGCTGTGCAAGCACTGCTATTCCAATCCAATTTGTCTTTTCCATGGTAAGATATCATTACTCAATTCATTTTGA 1446 0.3831 MGASKVARCGRRRTMVDKSSIIQPANRHISHKLSEFDLADSEWTNRIPECPVYHPSEEEFEHPLVYLQKIGPEAYKYGICKIVSPIAASNPAAYVLMKENKDFKFETNVQPLRLSKWNEKDIITFPMRGRKYTYHEFEALANKAFFSRFCSSEGLSSSYVEKEFWHEMVHGEKGTVEYGVNVEGSAFSCDPDDKLGTSKWNLKNFSRLLQSPFRLVDREIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYSVPGNAASQFEKTVLYHVYCNKNLTKHGEDGAFKFLAQKTTMFPPNVLLQHDVAVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAAASKRYAHLRMLPIIPYEELLCKEAMLVYKSSKVRSSRNKPENTTSYRAIVLSFLHLMQFYKKSLSQLNSSRKLSTSSNVLGSIKCSLCYRDCYVAYLLCKHCYSNPICLFHGKISLLNSF* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00394 481 ProSiteProfiles JmjC domain profile. 194 367 IPR003347 -
Rops1g00394 481 SMART JmjN_1 49 90 IPR003349 -
Rops1g00394 481 SMART cupin_9 194 367 IPR003347 -
Rops1g00394 481 SUPERFAMILY Clavaminate synthase-like 191 384 - -
Rops1g00394 481 PANTHER LYSINE-SPECIFIC DEMETHYLASE 42 472 - -
Rops1g00394 481 Gene3D Cupin 50 412 - -
Rops1g00394 481 ProSiteProfiles JmjN domain profile. 50 91 IPR003349 -
Rops1g00394 481 Pfam jmjN domain 51 83 IPR003349 -
Rops1g00394 481 Pfam JmjC domain, hydroxylase 227 350 IPR003347 -
Rops1g00394 481 FunFam Lysine-specific demethylase isoform A 45 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00394 Rops-Chr1 10739483 10741818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00394 8 465 JUMONJI Transcription Factor Family AT2G34880 31.191 3.10e-60 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops1g00394 JmjC 3.7e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00394 - - gmx:100793144 815.453