Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00383 ATGGATTGTTCCAATGAACAAGTTCATGAGGTGATGTACCCTGTAGATGGGGAAAGTGGAGAGATTCATGTCCATGATGAAGTCTTGCATGGGGCAACTTTACTACTATCTAAGGCTGCACAACTCAATTTTGCAGTTGGCTCTCAAGTTTGGATTGAGGACCCTGAGGATGCTTGGATAGATGGAGAAATCGTGGAATCTAATAATGAACAGATCACGGTTAGCTTTGAATCAGGCACAAGGGTTGTTAGCAAAACATCTAATATCTATCCCAAAGATCCTGAATTCCCAGAAAGTGGTGTGGAAGATATGACAAGGTTGGCATATCTGCATGAACCAGGGGTACTTCAAAATTTGCATATTCGATATGCCATAAATGAAATATATACATACACAGGAAATATATTGATAGCTGTGAACCCTTTTCAAAGGTTACCTCATTTGTATGCCAACAGTACAATGGCACAGTATAAAGGTGCGGCTTTTGGTGAGCAGAGCCCACATCCGTTTGCAATTGCAGGTTCTGCATATAGGAAGATGATAAATGAAACAGCAAGCCAAGCTATTTTGGTTAGTGGAGAAAGTGGAGCAGGTAAAACAGAAAGTACGAAGATGCTTATGCATTATCTTGCCTTCTTGGGAGGGAGAGCAGCATCAACCGAGGGACGGTCTGTGGAGCAACAAGTTTTGGAGTCCAATCCTGTTTTAGAAGCATTTGGCAATGCAAAGACAGTTAGGAATAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACATATTTGCTGGAACGATCCCGTGTTTGTCAAGTTTCTGATCCAGAGAGAAATTATCATTGTTTTTATATGCTTTGTGCTGCACCGGAAGAGGTTGTTAATAGGTACAAACTGGGAAATCCAAGAAAATTTCATTACCTTAATCAATCAAATTGCTATGAGCTGGATAGTCTGGATGATTCAAAGGAATACATTGCAACTAGGAGAGCTATGGATGTTGTTGGGATTAGCTCTGATGAGCAGGATGCTATATTTCGAATAGTAGCCTCGGTACTTCACTTAGGAAACATTGAATTTGTAAAGGGAGCGGAAGATGAGACGGATTCCTCTCAACCCAAGGATGAACAATCCCGTTTCCACCTAAAAGCTGCAGCTGAACTTTTAATGTGTGATGAGAAGGCCCTTGAAGACTCTTTCTGCAAACGTGTTATGGTGACTCGTGGTGAGGCCATAACAAAATGTCTCGATCCAAATTCTGCAGCTCTCAGTAGGGATGCATTGGCTAAAATAGTTTATTCAAGGCTTTTTGACTGGATTGTGGAGAAGATTAACAACTCTATTGGGCAAGATCCAGATTCAAAGCACTTAATTGGGGTTCTAGATATATATGGATTTGAGAGTTTCAAGACAAACAGCTTTGAGCAATTTTGTATCAACTTGACAAATGAGAAATTACAGCAACATTTCAACCAGCATGTCTTTAAAATGGAGCAAGAGGAATATACAAAAGAAGAAATTGATTGGAGTTATATAGAGTTCGTTGATAATCAAGATGTTCTTGATCTTATAGAGAAGAAACCTGGTGGTATTATTGCTCTTCTGGATGAGGCCTGTATGTTTCCAAGATCAACGCATGAAACACTTGCTGAAAAGCTATATCAAACATTGAAAGACAATAAACGCTTCAGCAAGCCAAAGTTGTCTCGTACTGATTTCACCATCAACCACTATGCTGGTGATGTCACTTACCAAACAGAACTCTTCCTTGATAAAAACAAAGACTATGTTGTTCCAGAGCATGCTGCCCTACTCAGTGCTTCAAAGTGCTCCTTTGTTTCAGGGCTTTTCCCACCTTTACCTGAGGAAACTACTAAATCAACAAAGTTCTCTTCTGTATCCACTCAGTTTAAGCTCCAACTGCAAGCTTTGCTTGAAATACTGAATGCTACTGAGCCTCACTACATCCGTTGTGTAAAGCCAAACAATCTTCTTAAGCCAGGGATATTCGAGAACAATAATGTGTTGGGGCAGCTTCGATGCGGGGGAGTAATGGAGGCGATTAGGATAAGTTGTGCAGGATATCCCACTAGAAAGAACTTTGATGAATTTGTTCAACGGTTTAGTATCTTGGAACCTAAGGTTCTGAAAGCATGCCCTGATGAGATGACTGCTTGCAAGAGGCTTCTAGATAGAGCGAATCTAAAAGATTATCAGATTGGAAAGACAAAAGTGTTTCTGAGAGCTGGTCAAATGGCAGAACTAGATGCATGTCGTGCTGAGGTCTTAGGAAGATCTGCAAGTGTTATTCAGAGAAAAGTTCGTACATACTATTGTCAGAAACACTACAATTTATTGCGATTCTCTGCCGTTGAATTACAAAGGGTTGCTAGAGGACAACTTGCACGCCATCAGTATGAATGCATGAGGAGGGAAGCTGCTTCTTTGAAAATCCAGAAATACTTCCGCATGTATCTTTCCAAAAGTGCTTACAAAACTAGTTATGCCGCAGCTGTTTGTATTCAAACTGGCATGAGAGGGATGGCTGCTAGAAATGACCTTAGATTCAGGAAGCGGACACAAGCTGCAATTGTTATTCAGTGTCACCACAGAGGTTATTTGGCTCGTACTTATTACCGAAGGCTAAAGAAAGCAGCAATTGCTGCACAGTGTTCCTGGAGGAGAACATTGGCACGCAGAGAACTTCGAAAGCTTAGAATGGCTGCTAAGGAAGCCAAGGCTCTAGAAGCTGCCAAACTTAATCTGGAAAAGCAAGTAGAAGAACTAACTTTGTCTCTAGAAACAGAGAAGAGAATGAGGGAAGCCAAGACACAGGAAAATGAAAAATTACAACATGCTTTGCAAGAGATGGAGCTTCAGTTCCAAGAAACTAAGGCAACACTCATTCAGGAACTTGAGGAAGCCAAGACACAGGAAAATGAAAAATTACAACATGCTTTGCAAGAGATGGAGCTTCAGTTCCAAGAAACTAAGGCAACACTCATTCAGGAACTTGAGGCTGCCAAGAAAGTAGCTGAGCAAACTCCAACCATACAGGAGGTTCCTGTTAATGTTGTTGATAATGAATTGATCAATAAGCTTACTGCAGAAAATGAACAACTCAAGGAGTTGGTTAATTCATTAGAAAGTAAAACTACACAGGAGTTTCCTGTTAATGTCACCGACAATGAACTGATCAATAAGCTCACTGCAGAGAACAAAGATCTTAAGGAGCTGGTTAATTCATTGGAAAATAAAACTACACAGGAGTTTCCTGTTAATGTCACCAACAATGAACTGATCAATAAGCTCACTGCAGAGAACAAAGATCTTAAGGAGCTGGTTAATTCATTGGAAAATAAAGCTACACAGGAGTTTCCTGTTAATGTCACCGACAATGAACTGATCAATAAGCTCACTGCAGAGAACAAAGATCCTAAGGAGCTGGTTAATTCATTGGAAAATAAAACTACACAGGAGTTTCCTGTTAATGTCACTGACAATGAACTGATCAATAAGCTCACTGCAGAGAACAAAGATCCTAAGGAGCTGGTTAATTCATTGGAAAATAAAACTACACTGGAGTTTCCTGTTAATGTCACTGACAATGAACTGATCAATAAGTTCACTGCAGAAAACAAAAATCTTAAGGAGCTGGTTAATTCATCGGAAAATAAAACTATGCAGGAGTTTCCTGTTAATGTCACTGACAATGAACTGATCAATAAGCTTACGGCAGAAAACAAAGATCTCAAGGATCATGTTAATTCATTGGAAAGGAAAATCGATGAAATGGAGAGGAAATATGAAGAAAGTAACAAGCTGAGTGAAGAGCGCATGAATCAAATTATAGAGACAGAATCAAAGATGATTGAGCTCAAGACAAATATGCAGAGACTTGAAGAAAAAGTCTCTGACATGGAAACTGAGAATCAAATTTTGCGACAGAAAGCCCTATTAAGTTCATCATCCCAGAGAATGTCAGCGCCTTTGGAAAATGGTCAACAGGCACCACCACTAACTTCTGCATCATCAAAAACATTTGGTTCAGAAACGCAAAGGAGATCTCATATGGAGAGGCATCAAGAAAGCGTAGATGCTCTTTTCAAATGTGTGACAAAAAATCTTGGGTTCTCTGAAGGAAAACCTGTTGCAGCATTTACCCTTTATAATTGTCTGCTACATTGGAAATCTTTTGAAGCAGAAAAGACAAGTATATTTGATTGCCTTATTCAGCTGATTGGTTCTGAAATTGAGGATCAGGATAATAATGATTGTATGGCTTACTGGTTGTCCAACACATCTGCTTTGTTTTTCCACCTTCAGAGATGTTTGAGAGTACCTACAGCACGTAAACCACCCACTCCAACATCATTTTTTGGGAGGGTGGCCCGGAGTTTCCGTTCATCCAATAGCCTTTCCAGTAATGCATTTGATGTAGTGCACCAAGTTGATGCCAAGTATCCAGCTTTACTTTTCAAGCAACAGCTTGCAGCTTATGTAGAAAAGATATATGGAATCGTTCGAGAAAATTTGAAGGAAGAATTGTCACCTCTGCTTTCTTCTTGCATTCAGGCACAAAAAACATCAAATGACAACAGCCAACCAACTTGTTCTTGGCTCAGCATTATTGAATGCCTTAATAAATTTCTCAATATTCTGAAAGAAAATTATGTGCCTCCCGTTCTAATTCAGAAGCTATTTAATCAGATTTTTCAATACATCAATGTAGAACTCTTTAATAGCCTTCTTTTAAATCGAGAATGCTGCACATTCGACAATGGAGAATATGTAAAATCAGGGTTTGCTGAACTAGAACTATGGTGTACTGAAACAACAGAGGAGTATGCTGGCTCATCTTTGGATGAACTCAAACATGTGAGGCAAGCAGTTAGATTCTTGGTTACACCAGAGAAGGATGGACTATCCTATGATGATCTTACAAATGACATCTGCCCTGTCCTGAGTGCTCAACAGCTTCATAGAATATGTACACTTTACTGGGATGACAATGAAAATATGTCGAATGTATCATCAGATGTCACTACTAGATTGAAGCTTCTAATGACAGATGGTGTAGATGGGGTAGATGATGATAACAAATCCTTCTTGTTGGAAGACAACTCAAGTGTTCCTATTATTGTTGAAGAGATATCTAATACCCATCAAGATAAGACTATTCCAAAAGTAAAACCTCCTGCAGAACTTCTTGAGGATGCATCCTTCCAATTTTTACATGATTACTCTTAG 5286 0.3944 MDCSNEQVHEVMYPVDGESGEIHVHDEVLHGATLLLSKAAQLNFAVGSQVWIEDPEDAWIDGEIVESNNEQITVSFESGTRVVSKTSNIYPKDPEFPESGVEDMTRLAYLHEPGVLQNLHIRYAINEIYTYTGNILIAVNPFQRLPHLYANSTMAQYKGAAFGEQSPHPFAIAGSAYRKMINETASQAILVSGESGAGKTESTKMLMHYLAFLGGRAASTEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPEEVVNRYKLGNPRKFHYLNQSNCYELDSLDDSKEYIATRRAMDVVGISSDEQDAIFRIVASVLHLGNIEFVKGAEDETDSSQPKDEQSRFHLKAAAELLMCDEKALEDSFCKRVMVTRGEAITKCLDPNSAALSRDALAKIVYSRLFDWIVEKINNSIGQDPDSKHLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETLAEKLYQTLKDNKRFSKPKLSRTDFTINHYAGDVTYQTELFLDKNKDYVVPEHAALLSASKCSFVSGLFPPLPEETTKSTKFSSVSTQFKLQLQALLEILNATEPHYIRCVKPNNLLKPGIFENNNVLGQLRCGGVMEAIRISCAGYPTRKNFDEFVQRFSILEPKVLKACPDEMTACKRLLDRANLKDYQIGKTKVFLRAGQMAELDACRAEVLGRSASVIQRKVRTYYCQKHYNLLRFSAVELQRVARGQLARHQYECMRREAASLKIQKYFRMYLSKSAYKTSYAAAVCIQTGMRGMAARNDLRFRKRTQAAIVIQCHHRGYLARTYYRRLKKAAIAAQCSWRRTLARRELRKLRMAAKEAKALEAAKLNLEKQVEELTLSLETEKRMREAKTQENEKLQHALQEMELQFQETKATLIQELEEAKTQENEKLQHALQEMELQFQETKATLIQELEAAKKVAEQTPTIQEVPVNVVDNELINKLTAENEQLKELVNSLESKTTQEFPVNVTDNELINKLTAENKDLKELVNSLENKTTQEFPVNVTNNELINKLTAENKDLKELVNSLENKATQEFPVNVTDNELINKLTAENKDPKELVNSLENKTTQEFPVNVTDNELINKLTAENKDPKELVNSLENKTTLEFPVNVTDNELINKFTAENKNLKELVNSSENKTMQEFPVNVTDNELINKLTAENKDLKDHVNSLERKIDEMERKYEESNKLSEERMNQIIETESKMIELKTNMQRLEEKVSDMETENQILRQKALLSSSSQRMSAPLENGQQAPPLTSASSKTFGSETQRRSHMERHQESVDALFKCVTKNLGFSEGKPVAAFTLYNCLLHWKSFEAEKTSIFDCLIQLIGSEIEDQDNNDCMAYWLSNTSALFFHLQRCLRVPTARKPPTPTSFFGRVARSFRSSNSLSSNAFDVVHQVDAKYPALLFKQQLAAYVEKIYGIVRENLKEELSPLLSSCIQAQKTSNDNSQPTCSWLSIIECLNKFLNILKENYVPPVLIQKLFNQIFQYINVELFNSLLLNRECCTFDNGEYVKSGFAELELWCTETTEEYAGSSLDELKHVRQAVRFLVTPEKDGLSYDDLTNDICPVLSAQQLHRICTLYWDDNENMSNVSSDVTTRLKLLMTDGVDGVDDDNKSFLLEDNSSVPIIVEEISNTHQDKTIPKVKPPAELLEDASFQFLHDYS* 1762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00383 1761 Gene3D - 873 923 - -
Rops1g00383 1761 Gene3D - 775 825 - -
Rops1g00383 1761 Gene3D - 826 872 - -
Rops1g00383 1761 Pfam DIL domain 1579 1682 IPR002710 -
Rops1g00383 1761 Pfam IQ calmodulin-binding motif 872 892 IPR000048 GO:0005515
Rops1g00383 1761 Pfam IQ calmodulin-binding motif 825 844 IPR000048 GO:0005515
Rops1g00383 1761 Pfam IQ calmodulin-binding motif 896 915 IPR000048 GO:0005515
Rops1g00383 1761 Pfam IQ calmodulin-binding motif 801 818 IPR000048 GO:0005515
Rops1g00383 1761 ProSiteProfiles IQ motif profile. 846 875 IPR000048 GO:0005515
Rops1g00383 1761 Coils Coil 1253 1329 - -
Rops1g00383 1761 MobiDBLite consensus disorder prediction 1336 1363 - -
Rops1g00383 1761 ProSiteProfiles IQ motif profile. 871 900 IPR000048 GO:0005515
Rops1g00383 1761 ProSiteProfiles Myosin motor domain profile. 99 772 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00383 1761 Pfam Myosin head (motor domain) 101 760 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00383 1761 MobiDBLite consensus disorder prediction 1336 1373 - -
Rops1g00383 1761 ProSiteProfiles IQ motif profile. 798 827 IPR000048 GO:0005515
Rops1g00383 1761 CDD MYSc_Myo11 113 760 IPR036018 -
Rops1g00383 1761 ProSiteProfiles IQ motif profile. 823 849 IPR000048 GO:0005515
Rops1g00383 1761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 826 IPR027417 -
Rops1g00383 1761 Coils Coil 907 1012 - -
Rops1g00383 1761 PANTHER MYOSIN 1259 1690 - -
Rops1g00383 1761 PRINTS Myosin heavy chain signature 186 211 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00383 1761 PRINTS Myosin heavy chain signature 234 261 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00383 1761 PRINTS Myosin heavy chain signature 522 550 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00383 1761 PRINTS Myosin heavy chain signature 129 148 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00383 1761 PRINTS Myosin heavy chain signature 469 497 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00383 1761 ProSiteProfiles IQ motif profile. 894 923 IPR000048 GO:0005515
Rops1g00383 1761 Coils Coil 1109 1133 - -
Rops1g00383 1761 Coils Coil 1043 1066 - -
Rops1g00383 1761 FunFam unconventional myosin-Va 825 873 - -
Rops1g00383 1761 FunFam Class V myosin 479 620 - -
Rops1g00383 1761 Pfam Myosin N-terminal SH3-like domain 46 86 IPR004009 GO:0003774|GO:0005524|GO:0016459
Rops1g00383 1761 Coils Coil 1218 1238 - -
Rops1g00383 1761 FunFam unconventional myosin-Va 874 921 - -
Rops1g00383 1761 SMART DIL_2 1578 1685 IPR002710 -
Rops1g00383 1761 Gene3D Kinesin motor domain 102 702 IPR036961 -
Rops1g00383 1761 Gene3D - 707 770 - -
Rops1g00383 1761 SMART iq_5 774 796 IPR000048 GO:0005515
Rops1g00383 1761 SMART iq_5 870 892 IPR000048 GO:0005515
Rops1g00383 1761 SMART iq_5 822 844 IPR000048 GO:0005515
Rops1g00383 1761 SMART iq_5 797 819 IPR000048 GO:0005515
Rops1g00383 1761 SMART iq_5 893 915 IPR000048 GO:0005515
Rops1g00383 1761 SMART iq_5 845 867 IPR000048 GO:0005515
Rops1g00383 1761 CDD MyosinXI_CBD 1371 1728 IPR037975 GO:0007015
Rops1g00383 1761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 826 922 IPR027417 -
Rops1g00383 1761 Coils Coil 1078 1101 - -
Rops1g00383 1761 Gene3D - 479 663 - -
Rops1g00383 1761 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 45 94 IPR004009 GO:0003774|GO:0005524|GO:0016459
Rops1g00383 1761 ProSiteProfiles Dilute domain profile. 1420 1703 IPR002710 -
Rops1g00383 1761 SMART MYSc_2a 93 773 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops1g00383 1761 FunFam Myosin heavy chain 290 345 - -
Rops1g00383 1761 Gene3D - 290 348 - -
Rops1g00383 1761 FunFam Myosin 2 350 469 - -
Rops1g00383 1761 Gene3D - 47 92 IPR008989 GO:0003774|GO:0005524|GO:0051015
Rops1g00383 1761 Gene3D Myosin VI head, motor domain, U50 subdomain 350 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00383 Rops-Chr1 10547819 10570811 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00383 39 1759 Myosins gene family AT1G04600 57.477 0.0 1962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00383 K10357 - gmx:100791031 2466.03