Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00375 ATGAGTTCCAATTCCAAACAAAATCAGCTTCCCACAGAGGTAGCAAACGTAGATGATGCTTACCTCTCTGCTTTGAAGCTATGTTTCAGCCGGGTCTTTCCTGCAATCCTAAATGCTGCTGTTGATCTCAATTTGTTTGAGATTATAGCTAAGGGACAAAGTTCAATTGGTTCAAGTTTGTCTGTCTTTGAAATTGCTTCTCAGTTTCCAAATCAACACTCAGATTTGGCTAACAGGCTTGAGCGCATATTGCCTGTGCTAGCCAGTTATTCTCTTTTGACTTGCTCCATTCGTACCAATGAAGATGGTAAGAGAGAAAGAGTTTATGTTCTTTCACCCATTGGTGAATACTTTGCATGTGATAACGATGGATATTCTTTGGGTCCATTCTCAACTTTAGTGCATCGAGGATGTCAGAAACTCTGGGATGATGTAAAGGATGCAATTGTAGACCCTAATAACAATAACCATTTCGAAGAAGTCCATGGATTGCCATTTTTTCAATATATGGAGAATGATAAAGAGCTGAATCAAATATTTAACAAAGCAATGGCCCATGCAGGCCCATTAGAAATAAAAAGGGTCATTAAATTATATAAAGGATTTGAGGGAGTATCAACATTGGTTGATGTAGGAGGTGGACTTGGGCAGGCCTTAAAACAGATTATCTCTGAATATCCTTCAATAAAAGGGATTAATTTTGATTTACCTCAAGTGATTCAACATGCATCACCTCATCCAGGGATAGAGCATGTTCAAGGAAATATGTTTGAAAGTGTTCCAAAAGGTGATGCCATCTTACTAAAGCGTGTATGTCATAATTGGCCTGATGAAGAATGTGTGAAGTTTTTAAGAAATTGCCACAAAGCTTTGCCAAAATATGGAAAGGTGATTGTTGTGGACTTCATACTTCCAGAAGTTCCAGGCCCAAGCAGTGTCTCTAAGCTTGCTTGTGGTGTTGACAGTCTCATGTTTTTAACAAATGATGGAAAAGAAAGAACTGTGGATGAATTTCAAAGCCTTTGCAAGAGCTCTGGATTTTCCAAATTTCATGTTGCTTCTAGTGAGTTCTCATCTACGGTAGGAGTGATGGAATTTTATAAATAA 1107 0.3821 MSSNSKQNQLPTEVANVDDAYLSALKLCFSRVFPAILNAAVDLNLFEIIAKGQSSIGSSLSVFEIASQFPNQHSDLANRLERILPVLASYSLLTCSIRTNEDGKRERVYVLSPIGEYFACDNDGYSLGPFSTLVHRGCQKLWDDVKDAIVDPNNNNHFEEVHGLPFFQYMENDKELNQIFNKAMAHAGPLEIKRVIKLYKGFEGVSTLVDVGGGLGQALKQIISEYPSIKGINFDLPQVIQHASPHPGIEHVQGNMFESVPKGDAILLKRVCHNWPDEECVKFLRNCHKALPKYGKVIVVDFILPEVPGPSSVSKLACGVDSLMFLTNDGKERTVDEFQSLCKSSGFSKFHVASSEFSSTVGVMEFYK* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00375 368 FunFam Uncharacterized protein 119 368 - -
Rops1g00375 368 SUPERFAMILY "Winged helix" DNA-binding domain 18 123 IPR036390 -
Rops1g00375 368 PIRSF O-mtase 1 368 IPR016461 GO:0008168
Rops1g00375 368 Gene3D Vaccinia Virus protein VP39 123 368 IPR029063 -
Rops1g00375 368 CDD AdoMet_MTases 207 304 - -
Rops1g00375 368 FunFam Caffeic acid 3-O-methyltransferase 2 118 - -
Rops1g00375 368 Gene3D - 1 118 IPR036388 -
Rops1g00375 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 354 IPR029063 -
Rops1g00375 368 PANTHER O-METHYLTRANSFERASE 29 357 IPR016461 GO:0008168
Rops1g00375 368 Pfam O-methyltransferase domain 142 348 IPR001077 GO:0008171
Rops1g00375 368 Pfam Dimerisation domain 36 88 IPR012967 GO:0046983
Rops1g00375 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 368 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00375 Rops-Chr1 10255839 10257427 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00375 1 368 Monolignol Biosynthesis Gene Families AT5G54160 43.514 6.72e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00375 - - aprc:113869089 551.592