Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00373 ATGAGTTCCAATTCCAAACAAAATGAGCTTCCCTCAGAGGAAGCAAAGGTCGATAATGCTTACCCCTTTTCATTGTTGCTGTGTTTTAGTCGTATCTTTCCTACAACACTAGATGCTGCTGTTGATCTCAATATTTTTGAGATCATAGCTAAGACAAGTGGTTCAAGCTTGTCAGTTTCTGAGATTGCTTCTCAACTTCCAAATCAACACTCACATTTGACTAATAGGCTTGAGCGTATATTACTTGTACTAGCTAGTTATTCTCTTTTAACATGCTCCATTCTCACCAATGAAGATGGTAAGAGAGAAAGAGTTTATCCTCTCTCACCCATTGGTGAATACTTTGCATGTGATAAAGATGGATGCTCTCTAGGTCCACTCTCAACTTTGGTGCATCGAGGATTTCATAAAGTTTGTATCTCTTCTACCCTCCCCTGCGCCGCTCCCTCATCGTCACCGCCCTCCTACACCGCCGTCGACGACTACAAGACGTTTACCGTCGTGAGTTCAGATCTTAGTCACCCCAACTGA 531 0.4275 MSSNSKQNELPSEEAKVDNAYPFSLLLCFSRIFPTTLDAAVDLNIFEIIAKTSGSSLSVSEIASQLPNQHSHLTNRLERILLVLASYSLLTCSILTNEDGKRERVYPLSPIGEYFACDKDGCSLGPLSTLVHRGFHKVCISSTLPCAAPSSSPPSYTAVDDYKTFTVVSSDLSHPN* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00373 176 Gene3D - 1 115 IPR036388 -
Rops1g00373 176 FunFam Caffeic acid 3-O-methyltransferase 2 115 - -
Rops1g00373 176 SUPERFAMILY "Winged helix" DNA-binding domain 24 119 IPR036390 -
Rops1g00373 176 PANTHER O-METHYLTRANSFERASE 30 144 IPR016461 GO:0008168
Rops1g00373 176 Pfam Dimerisation domain 36 85 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00373 Rops-Chr1 10222263 10224780 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00373 18 127 Monolignol Biosynthesis Gene Families AT5G54160 39.091 1.23e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00373 - - lja:Lj0g3v0124669.1 187.963