Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00370 ATGAGTTCCAAATCCAAACAAAATGAGCTTCCGACAGAGGTAGTAAAGGTTGATGATGCTTACCTCTCAGCATTGTTGCTATCTTTCAGCAGAGTCTTTCCTGCAATCCTAAATGCTGCCATTGATCTCAATTTGTTTGGGATCATTGCTAAGGCAAAATGTGGTTCAAGCTTGTCTGCTTCTGAGATTGCTTCTATGCTTCCAAATCAACACTCAGATTTGGCTAATAGACTTGAGCGTATATTACCTGTGCTAGCTAGTTATTCTCTTTTGACTTGCTCCATTCGTACCAATGAAGATGGTAAGGGAGAAAGAGTTTATGCTCTTTCACCCATTGGTGAATACTTTGCATGTGATAATGATGGATGCTCTTTGGGTCCATTCTCAACTTTAGTGCATCAAGGATTTCATAAAATCTGGGATGATGTAAAGGATGCAATTGTAGACCCTAATAACAATAACCATTTCCAAGAAGTCCATGGATTGCCCTTTTTTCAATGTACGGAGAATGATAAAGAGCTAAATCAAATATTTAACAAAGCAATGGCCCATGCAGGCCCATTAGAAATAAAAAGGGTCATTAAATTATATAAAGGATTTGAGGGAGTATCAACATTGGTTGATGTCGGAGGTGGAGTTGGGCAAGCCTTAAAACAGATTATCTCTGAATATCCTTCAATAAAAGGAATTAATTTTGATTTGCCTCAAGTGATTCAACATGCATCACCTCATCCAGGGATAGAGCATGTTCAAGGAAATATGTTTGAAAGTGTTCCAAAAGGTGATGCCATCTTACTAAAGCGTGTATGTCATAATTGGCCTGATGAAGAATGTGTGAAGTTTTTAAGAAATTGCCACAAAGCTTTGCCAAAATATGGAAAGGTGATTGTTGTGGACTTCATACTTCCAGAAGTTCCAGGCCCAAGCAGTGTCTCTAAGCTTGCTTGTGGTGTTGACAGTCTCATGTTTTTAACAAATGATGGAAAAGAAAGAACTGTGGATGAATTTCAAAGCCTTTGCAAGAGCTCTGGATTTTCCAAATTTCATGTTGCTTCTAGTGAGTTCTCATCTACGGTAGGAGTGATGGAATTTTATAAATAA 1101 0.3806 MSSKSKQNELPTEVVKVDDAYLSALLLSFSRVFPAILNAAIDLNLFGIIAKAKCGSSLSASEIASMLPNQHSDLANRLERILPVLASYSLLTCSIRTNEDGKGERVYALSPIGEYFACDNDGCSLGPFSTLVHQGFHKIWDDVKDAIVDPNNNNHFQEVHGLPFFQCTENDKELNQIFNKAMAHAGPLEIKRVIKLYKGFEGVSTLVDVGGGVGQALKQIISEYPSIKGINFDLPQVIQHASPHPGIEHVQGNMFESVPKGDAILLKRVCHNWPDEECVKFLRNCHKALPKYGKVIVVDFILPEVPGPSSVSKLACGVDSLMFLTNDGKERTVDEFQSLCKSSGFSKFHVASSEFSSTVGVMEFYK* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00370 366 Gene3D - 2 116 IPR036388 -
Rops1g00370 366 Pfam Dimerisation domain 36 86 IPR012967 GO:0046983
Rops1g00370 366 PANTHER O-METHYLTRANSFERASE 27 355 IPR016461 GO:0008168
Rops1g00370 366 FunFam Uncharacterized protein 117 366 - -
Rops1g00370 366 FunFam Caffeic acid 3-O-methyltransferase 2 116 - -
Rops1g00370 366 SUPERFAMILY "Winged helix" DNA-binding domain 18 121 IPR036390 -
Rops1g00370 366 Pfam O-methyltransferase domain 140 346 IPR001077 GO:0008171
Rops1g00370 366 CDD AdoMet_MTases 205 302 - -
Rops1g00370 366 PIRSF O-mtase 1 366 IPR016461 GO:0008168
Rops1g00370 366 Gene3D Vaccinia Virus protein VP39 120 366 IPR029063 -
Rops1g00370 366 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 352 IPR029063 -
Rops1g00370 366 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 366 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00370 Rops-Chr1 10180855 10182560 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00370 1 366 Monolignol Biosynthesis Gene Families AT5G54160 43.902 8.13e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00370 - - gmx:106794104 536.184