Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00367 ATGAGTTCCATTTCCAAACAAAATGAGCTTCCCTCAGAGGTAGCAAAGGTCGATGATGCTTACCCCTTTTCATTGTTGCTATGTTTTAGTCGAATCTTTCCTGCAACACTAGATGCTGCTGTTGATCTCAATATTTTTGAGATCATAGCTAAGACAAATGGTTCAAGCTTGTCAGTTTCTGAGATTGCTTCTCAACTTCCAAATCAACACTCACATTTGGCTAATAGGCTTGAGCGTATATTACCTGTACTAGCTAGTTATTCTCTTTTAACATGCTCCATTCTCACCAATGAAGATGGTAAGAGAGAAAGAGTTTATGCTCTCTCACCCATTGGTGAATACTTTGCATGTGATAAAGATGGATGCTCTCTAGGTCCACTCTCAACTTTGGTGCATCGAGGATTTCATAAAGTTTGGGATGATGTAAAGGATGCAATTGTAGACCCTAACAACTATAACCATTTCCAAAAAGTCCATGGATTGCCGGCTTTTCAATATATGGAGAATGATAAAGAGCTGAATCACATATTTAACAAAGCGATGGCCCAAGCTGGCAGACTAGAAATGAAAAGGATCATTAAATTGTATAAAGGATTTGAAGAAGTATCAACATTGGTTGATGTAGGAGGTGGAGTAGGGCAATCCTTAAAGCAGATTATCTCTGAATATCCTTCAATAAAAGGAATTAATTTTGATTTACCTCAAGTGATTCAAGATGCACCACCTCATCTAGGGATTGAGCATGTTGGAGGAGATATGTTTGAAAGCGTTCCAAAGGGTGATGCCATCTTATTAAAGCGTGTATGTCATAATTGGACTGATGAAGAATGTGTGAAGTTTTTAAGAAATTGCCACCAAGCTTTGCCAAGATATGGAAAGGTGATTATTGTGGACTGTATAATTCCAGAAGTTCCAAACCCAAGCAGTATCTCTAAGTATGCTTGTGTTATGGACTATCTCATGTTTCTAATACATGATGGAAAGGAAAGAACTGAGAATGAATTTCAAAGCTTATGCAGGAGCTCTGGATTTTCAAAATTCCATGTTGCTTGTAGTGATATCTCTACTATTGGAGCATTGCTTGGGAAGTGGAGCTGGAGGTTAAAGACAGAGGTCTCAGAGTTGTGGAATAGGGTTTTAAAATCAAAATACGGAGAAATGGATATGCCTGGTTGTAAACAGGGCAATGGGTGTTCAAAATGGTGGCGTGATGTTTTGGACGCTCATCCGGCACCTAACCTTTTAGTTAAAAAAGTGGGGAATGGGGAAAATACTTCATTTTGGCATGAACCTTGGGTGGGAGATTTAACCATCCAGTGCAGATTCTCTAGATTGTTTAACTTGGCTGCCAATAAAGAAGCATCAGTAGCAGATTCGGGGTCATGGAGGGATGGCAGATGGGTTTGGGAGATAATCTGGAGACGAAATTTGTTCTCTTGGGAAGAAGTGTTATTTCAAAACTTGCTCTTCGATCTAGACCCAATCTCTATGAAAAGGAACCAGCATGACAAATGGTGGTGGGATGGTGATCCTTCGGGCCTTTACTCGGTTAAGTCAGCTTATAAGCACTACAACAGAAATGACTTTTAA 1590 0.395 MSSISKQNELPSEVAKVDDAYPFSLLLCFSRIFPATLDAAVDLNIFEIIAKTNGSSLSVSEIASQLPNQHSHLANRLERILPVLASYSLLTCSILTNEDGKRERVYALSPIGEYFACDKDGCSLGPLSTLVHRGFHKVWDDVKDAIVDPNNYNHFQKVHGLPAFQYMENDKELNHIFNKAMAQAGRLEMKRIIKLYKGFEEVSTLVDVGGGVGQSLKQIISEYPSIKGINFDLPQVIQDAPPHLGIEHVGGDMFESVPKGDAILLKRVCHNWTDEECVKFLRNCHQALPRYGKVIIVDCIIPEVPNPSSISKYACVMDYLMFLIHDGKERTENEFQSLCRSSGFSKFHVACSDISTIGALLGKWSWRLKTEVSELWNRVLKSKYGEMDMPGCKQGNGCSKWWRDVLDAHPAPNLLVKKVGNGENTSFWHEPWVGDLTIQCRFSRLFNLAANKEASVADSGSWRDGRWVWEIIWRRNLFSWEEVLFQNLLFDLDPISMKRNQHDKWWWDGDPSGLYSVKSAYKHYNRNDF* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00367 529 PANTHER O-METHYLTRANSFERASE 30 344 IPR016461 GO:0008168
Rops1g00367 529 SUPERFAMILY "Winged helix" DNA-binding domain 24 119 IPR036390 -
Rops1g00367 529 FunFam Uncharacterized protein 116 364 - -
Rops1g00367 529 Pfam Dimerisation domain 36 85 IPR012967 GO:0046983
Rops1g00367 529 Gene3D - 32 192 IPR036388 -
Rops1g00367 529 Pfam O-methyltransferase domain 139 345 IPR001077 GO:0008171
Rops1g00367 529 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 364 IPR016461 GO:0008168
Rops1g00367 529 Gene3D Vaccinia Virus protein VP39 174 352 IPR029063 -
Rops1g00367 529 FunFam Caffeic acid 3-O-methyltransferase 2 115 - -
Rops1g00367 529 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 351 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00367 Rops-Chr1 10147557 10150000 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00367 1 351 Monolignol Biosynthesis Gene Families AT5G54160 46.045 3.06e-106 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00367 - - gmx:100793053 526.168