Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00365 ATGGGATCCGTTTCTAATCAAACTGAGCTTTCCAAGGAGGTAGAAAAGGTTGATGATGCTTACCTCTCTGCTTTGTTGCTATCCTTTAATCGCATATTTTCTGCAATCTTAAACGCTGCTATTGATCTTAAATTGTTTGATATCATAGCTAAGGCAAAATGTGGTTTAAGCCTGTCTGCTTCTGAGATTGCTTCTCAACTTCCAAATCAACACTCAGATTTGGCTAACAGGCTTGAGCGCATATTGCCTGTGCTAACAAGTTATTCTCTTTTGACTTGCTCCATTCGTACCAATGGAGATGGGAAGAGAGAAAGAGTTTATGTTGTCTCACCCATTGGTGAGTACTTTGTATGTGATAACGATGGAGGTTCTTTGGCTCCACTCTCAACTTTGGTGCATCGAGGATTTCATAGAGTTTGGAAGGATGTCATGGATGCAATTATGGACCCTAATAACAATAACCATTTCCAAAAGATTCATGGATTGCCGTCTTATCAATACATGGAGAAGGATAACGAGATGAATAACATTTTTAACCAAGCAATGGCTCATTCCGGTCCATTAGAGATGGAAAGGATCCTTAAATTATATAAAGGATTTGAGGGAGTCTCAACATTGGTTGATGTTGGAGGTGGAGAAGGGCAAGCCTTAAAACATATTATCTCTGAATATCCTTCAATAAAAGGAATTAATTTTGACATGCCTCAAGTGATTCAACATGCTCCACCCCATCAAGGGATTGAGCATGTTGAAGGAGATATGTTTGAAAGTGTTCCAAAGGGTGATGCCATTTTGCTAAAGCTTGTATGCCATAATTGGTCAGATGAAGAATGTGTGAAGTTTTTAAGAAATTGTTACAAAGCTTTGCCACAACATGGGAAGGTCATTGTTTTGGACTATATAATGCCAGAAGTCCCCAATTCAAGCAGAATATCTAAGCATACTTGTGTTATCGACAATCTCATGTTTTTAGTAACAAGTGGAAAGGAGAGAACTGAGAAAGAATTTGAGAACCTATGCATGAGCTCTGGATTTTCTAAATTTCTTGTTACTTGCAGTGATTTCTCTGTTATGTCAGGAGTGATGGAGTTTTATAAATAA 1101 0.3806 MGSVSNQTELSKEVEKVDDAYLSALLLSFNRIFSAILNAAIDLKLFDIIAKAKCGLSLSASEIASQLPNQHSDLANRLERILPVLTSYSLLTCSIRTNGDGKRERVYVVSPIGEYFVCDNDGGSLAPLSTLVHRGFHRVWKDVMDAIMDPNNNNHFQKIHGLPSYQYMEKDNEMNNIFNQAMAHSGPLEMERILKLYKGFEGVSTLVDVGGGEGQALKHIISEYPSIKGINFDMPQVIQHAPPHQGIEHVEGDMFESVPKGDAILLKLVCHNWSDEECVKFLRNCYKALPQHGKVIVLDYIMPEVPNSSRISKHTCVIDNLMFLVTSGKERTEKEFENLCMSSGFSKFLVTCSDFSVMSGVMEFYK* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00365 366 Pfam Dimerisation domain 36 86 IPR012967 GO:0046983
Rops1g00365 366 Gene3D - 32 193 IPR036388 -
Rops1g00365 366 FunFam Caffeic acid 3-O-methyltransferase 3 116 - -
Rops1g00365 366 FunFam Uncharacterized protein 117 366 - -
Rops1g00365 366 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 366 IPR016461 GO:0008168
Rops1g00365 366 PIRSF O-mtase 3 366 IPR016461 GO:0008168
Rops1g00365 366 CDD AdoMet_MTases 205 302 - -
Rops1g00365 366 Gene3D Vaccinia Virus protein VP39 175 353 IPR029063 -
Rops1g00365 366 PANTHER O-METHYLTRANSFERASE 30 355 IPR016461 GO:0008168
Rops1g00365 366 Pfam O-methyltransferase domain 140 346 IPR001077 GO:0008171
Rops1g00365 366 SUPERFAMILY "Winged helix" DNA-binding domain 17 121 IPR036390 -
Rops1g00365 366 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 363 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00365 Rops-Chr1 10105803 10109043 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00365 1 357 Monolignol Biosynthesis Gene Families AT5G54160 46.111 6.00e-105 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00365 - - aprc:113869089 533.102