Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00362 ATGAGTTCCAATTCCAAACAAAATGAGCTTCCGACGGAGGTAGCAAAGGTTGATGATGCTTACCTCTCTGCTTTGTTGCTATGTTTTAGTCGAATCTTTCCTGCAATCTTAAACGCTGCTATTGATCTCAATTTGTTTGAGATCATTAAGGCAAAATGTGGTTCAAGCTTGTCTGCTTCTGAGATTGCTTCTCAACTTCCTAATCAACACTCAGATTTGTCTAATAGGCTTGAGCGCATGTTGCCTGTGCTAGCCAGTTATTCTCTTTTAACTTGCTCCATTCGAACCAATGAAGATGGTAAGAGAGAAAGAGTTTATGCTCTCTCACCAAGTGGAGAATACTTTGCATGTGATAACGATGGAGGCTCTTTGGCTCCCCTCTCAACAATAGTGCATTGTGGATATCACCATGTTTGGAAGGATGTCAGTGATGCAATTGTGAACCCCAATAACAATAACCATTTTAAAAAAGTCCATGGATTGCCGTCTTATCAATATATGGAGCAAGATAAAGAGCTGAATCATATTTTTAACCAAGCAATGGCCCAATCCGGCCCATTAGAAATGAAAAGAATCCTTAAAGTATATAAAGGATTTGAGGGAATCTCAACATTGGTTGATGTGGGAGGCGGAAAAGGACAAGCCTTAAAACAGGTTATCTCTTAA 666 0.3964 MSSNSKQNELPTEVAKVDDAYLSALLLCFSRIFPAILNAAIDLNLFEIIKAKCGSSLSASEIASQLPNQHSDLSNRLERMLPVLASYSLLTCSIRTNEDGKRERVYALSPSGEYFACDNDGGSLAPLSTIVHCGYHHVWKDVSDAIVNPNNNNHFKKVHGLPSYQYMEQDKELNHIFNQAMAQSGPLEMKRILKVYKGFEGISTLVDVGGGKGQALKQVIS* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00362 221 Gene3D Vaccinia Virus protein VP39 118 221 IPR029063 -
Rops1g00362 221 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 138 219 IPR029063 -
Rops1g00362 221 Pfam O-methyltransferase domain 139 220 IPR001077 GO:0008171
Rops1g00362 221 Gene3D - 1 115 IPR036388 -
Rops1g00362 221 PANTHER O-METHYLTRANSFERASE 30 218 IPR016461 GO:0008168
Rops1g00362 221 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 221 IPR016461 GO:0008168
Rops1g00362 221 FunFam Caffeic acid 3-O-methyltransferase 2 115 - -
Rops1g00362 221 SUPERFAMILY "Winged helix" DNA-binding domain 18 120 IPR036390 -
Rops1g00362 221 Pfam Dimerisation domain 36 85 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00362 Rops-Chr1 9926149 9927688 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00362 1 221 Monolignol Biosynthesis Gene Families AT5G54160 37.838 2.81e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00362 - - lja:Lj0g3v0124669.1 320.087