Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00357 ATGGCCAATAAATCAGAATCCGAACCCAAAGCCGGTGCTACTGCACTGTCACCTCCCAAAAACGGGAAGAGAGAGGGTGAGGAAGAAGATGAGGAGAAGCAGGTGAGTGCAAAGAAGCAGAAGAGAGATGAGGTTGCTGAGGAACAAAAGAGTAAGGAAGATAAGGAGGAGATGGATATTTATGTGGGTGGTGGTTCTGAAGAACGTGATGAAGAGGCACAAAAGAAAAAGACAGAAGTTTTGATGAATGCTGCATCAAATGCTGAAAGACCTGATTTAAAAACTGTTAAAAAGGATACTTCTAGAGATACTGATAGTTTAGATGATGACAATGATGAAGAGGATCATGATCATGATCATGATAGCTGCAATGATACTGAACAACATATGTTTAAAAAACCTGTGAAAGATTCAGAGAGTTCAGAGTACGGTGAGGAAGAACTTGAGGAAGAGGCCTCCAAAACTCCTCAGGAAAGTCCTAGAACTCCAGCTACCCGAAAAGACAGATATGCTGCATCAAAGACAATATATGTTAGAAACTTGTCATTCAGTGTGGAACGGGCTGATATGGAAAATCTTTTCAAAGATTGTGGAGAAATTGTTGATGTTCGTCTCCATACAGATTGCGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCAGCACAAAAAGCTCTTGAGTTGGATAACACAGAATTGTTGAGACGTCCCATCATAGTTGGTATAGCTCTGGAAAAGAGGGAATATATCTCCAACAGAAGCAACTTGAGCAACTCATTCCGGAAAGGTGAAAGATTTCAGTCTCTAACTGTATTTGTGAGGGGTTTTGATACTTCCCTTGTGCAAGAGAAGATAAAAGCAAGCTTGGAAGAACATTTCAGTTCTTGTGGAGAGATTATGAGGATATCAATTCCGGAATTTCGTGATTCTGGTGTTGTTAAGGGGTTTGCTCACTTGGAGTTCAAGGATGTCGATAGCTTGAAGAAAGCTCTACAACTTCATCAAACTGAGCTTGGAGGTTATCCCTTGGCAGTTGAAAAAGCAAAGCCTCGACGTGATAATCAGGGCATAGGTAGTGACAGAGGTGGTGGTGGTTATCGATTTGGTGGAAGGGATAGATATGGTTATGGTGATGGAAGGGATAGATATGGTTATGGTGATGGAAGGAATAGAGATGGTTATGGTGATGGAAGGGACAGAAGTGGTTATGGTGGTAGAGTGGGTTGGAGAAGAAGTGGTGACAGTGGGAGGAGGCATTGGACATCCAATATACCAAGCACTGATGAAGGCACAGGGAGGAAGACCACTTTTGCAGATGATGACTATCGCAGCAGCAGCAGAAGCAGATATTGA 1368 0.4254 MANKSESEPKAGATALSPPKNGKREGEEEDEEKQVSAKKQKRDEVAEEQKSKEDKEEMDIYVGGGSEERDEEAQKKKTEVLMNAASNAERPDLKTVKKDTSRDTDSLDDDNDEEDHDHDHDSCNDTEQHMFKKPVKDSESSEYGEEELEEEASKTPQESPRTPATRKDRYAASKTIYVRNLSFSVERADMENLFKDCGEIVDVRLHTDCEGRFRGFGHVEFATAEAAQKALELDNTELLRRPIIVGIALEKREYISNRSNLSNSFRKGERFQSLTVFVRGFDTSLVQEKIKASLEEHFSSCGEIMRISIPEFRDSGVVKGFAHLEFKDVDSLKKALQLHQTELGGYPLAVEKAKPRRDNQGIGSDRGGGGYRFGGRDRYGYGDGRDRYGYGDGRNRDGYGDGRDRSGYGGRVGWRRSGDSGRRHWTSNIPSTDEGTGRKTTFADDDYRSSSRSRY* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00357 455 Gene3D - 259 392 IPR012677 -
Rops1g00357 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 355 IPR000504 GO:0003723
Rops1g00357 455 MobiDBLite consensus disorder prediction 423 437 - -
Rops1g00357 455 MobiDBLite consensus disorder prediction 349 455 - -
Rops1g00357 455 Coils Coil 28 58 - -
Rops1g00357 455 SUPERFAMILY RNA-binding domain, RBD 166 268 IPR035979 GO:0003676
Rops1g00357 455 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 275 400 - -
Rops1g00357 455 SMART rrm1_1 175 246 IPR000504 GO:0003723
Rops1g00357 455 SMART rrm1_1 275 351 IPR000504 GO:0003723
Rops1g00357 455 MobiDBLite consensus disorder prediction 378 422 - -
Rops1g00357 455 MobiDBLite consensus disorder prediction 438 455 - -
Rops1g00357 455 Gene3D - 98 258 IPR012677 -
Rops1g00357 455 MobiDBLite consensus disorder prediction 91 105 - -
Rops1g00357 455 MobiDBLite consensus disorder prediction 21 78 - -
Rops1g00357 455 MobiDBLite consensus disorder prediction 117 141 - -
Rops1g00357 455 SUPERFAMILY RNA-binding domain, RBD 273 385 IPR035979 GO:0003676
Rops1g00357 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 250 IPR000504 GO:0003723
Rops1g00357 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 243 IPR000504 GO:0003723
Rops1g00357 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 348 IPR000504 GO:0003723
Rops1g00357 455 MobiDBLite consensus disorder prediction 153 168 - -
Rops1g00357 455 MobiDBLite consensus disorder prediction 1 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00357 Rops-Chr1 9794551 9801971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00357 173 358 Eukaryotic Initiation Factors Gene Family AT3G16380 28.796 2.27e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00357 - K11294 lang:109360902 324.324