LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops1g00356	ATGGCTAATGCGACTGTTCCATTCCCCTCCAACCTTTTGCCATCTCCTTGGAGCCCTGAATGGATGAACAAAGCTGACAATGCATGGCAGCTCACAGCTGCAACACTAGTGGGCCTACAAAGTGTTCCAGGGCTCATAATCCTGTATGGTGGAGCAGTTAAGAAGAAATGGGCAGTGAACTCAGCATTCATGGCACTCTATGCTTTTGCTTGTGTTTTCTTCTGTTGGGTTGTGTGGGGTTATAGAATGTCCTTTGGTGATAGGCTTTTTCCATTTTGGGGAAAACCTGGTCTTGCACTTGATGAGGTTTATCTTTTCAAGCCAGCCTTTTTGGGGGCATTCCCAAATGCCACTATGGTGTATTTCCAGTGTGTGTTTGCAGCCATTACTTTGATTCTCATAGCTGGGGCTGTGTTGGGGCGCATGAACTTTTATGCTTGGATGTTGTTTGTGCCTTTGTGGCTCACATTCTCCTACACCTTCACAGCATTCAGTATATGGAGTACTCAAGGTTTTCTATCCAAAATGGGAATAATAGATTACTCAGGTGGATATGTGATCCATTTGTCTTCTGGGGTTGCTGGATTCACAGCTGCATATTGGGTTGGACCACGCCAAAACAAGGACAGGGAAAGGTTCCCTCCAAACAACATCCTTCTGATGCTAGCAGGGGCAGGGATGTTATGGATGGGATGGACAGGGTTCAATGGAGGAGACCCTTACTCAGTGAGCATGGATGCTTCCTTGGCTGTCTTGAATACACATGCTTGCACTGCTACCAGCTTGCTTACTTGGGTCATCCTTGATATCATTTTCTTCAGAAAGCCTTCTGTAATTGGTGCTGTTCAAGGCATGACCACTGGTTTGGTTTGCATCACCCCAGCTGCAGGGGTTGTTCAAGGATGGGCAGCACTTCTAATGGGGGTTTTATCTGGCTCAATTCCTTGGTTCACTATGATGGTAATCCACAAGAGATCAAAGCTGCTGCAGAAGGTTGATGATACAATGGCAGTGTTGCACACACATGCCATTGCAGGAAGCCTTGGAGGAATCCTAGCTGGGCTGTTTGCTGTGCCCAAACTGAACTACTTTTTCTATGGAAATTACAACCAATACGTTGGTCTATTTTATGGCTTCCAAATGAACATGGCCAAAACTGGATTCAGGCAAATAGGAATCCAACTCTTTGGGATCTTGTTTGTTGTCTTAGTTAATATCATAAGCACAAGTTTGATATGCCTCTTCATTCGAATTTTCATTCCATTAAGGATGTCTGAAGAGGATATGGATATAGGTGATGAGGCTGCTCATGGAGAAGAAGCTTATGCAATCTGGGGTCAAGGTGATAAGCTTGAAAATTCAAGTTCAAAGTATGGAAGTTCATTATATGATGATGTTGAAGCAGGGGCCACCAAGAACAAGCGTCGTGGCCAGCTTGAGATGATGTAG	1449	0.4479	MANATVPFPSNLLPSPWSPEWMNKADNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMALYAFACVFFCWVVWGYRMSFGDRLFPFWGKPGLALDEVYLFKPAFLGAFPNATMVYFQCVFAAITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSTQGFLSKMGIIDYSGGYVIHLSSGVAGFTAAYWVGPRQNKDRERFPPNNILLMLAGAGMLWMGWTGFNGGDPYSVSMDASLAVLNTHACTATSLLTWVILDIIFFRKPSVIGAVQGMTTGLVCITPAAGVVQGWAALLMGVLSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHTHAIAGSLGGILAGLFAVPKLNYFFYGNYNQYVGLFYGFQMNMAKTGFRQIGIQLFGILFVVLVNIISTSLICLFIRIFIPLRMSEEDMDIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSLYDDVEAGATKNKRRGQLEMM*	483

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops1g00356	482	PANTHER	AMMONIUM TRANSPORTER MEP2	10	454	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Rops1g00356	482	PRINTS	Rhesus blood group protein signature	123	139	IPR002229	GO:0005886
	Rops1g00356	482	PRINTS	Rhesus blood group protein signature	347	363	IPR002229	GO:0005886
	Rops1g00356	482	PRINTS	Rhesus blood group protein signature	250	272	IPR002229	GO:0005886
	Rops1g00356	482	PRINTS	Rhesus blood group protein signature	219	237	IPR002229	GO:0005886
	Rops1g00356	482	FunFam	Ammonium transporter	11	445	-	-
	Rops1g00356	482	NCBIfam	ammonium transporter	26	442	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Rops1g00356	482	Gene3D	Ammonium transporter AmtB like domains	15	446	IPR029020	-
	Rops1g00356	482	SUPERFAMILY	Ammonium transporter	21	424	-	-
	Rops1g00356	482	Pfam	Ammonium Transporter Family	28	442	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Rops1g00356	482	ProSitePatterns	Ammonium transporters signature.	180	205	IPR018047	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops1g00356	Rops-Chr1	9787199	9792821	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops1g00356	117	468	Inorganic Solute Cotransporters	AT2G38290	61.364	8.98e-143	412

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops1g00356	K03320		-	gmx:100787856	853.203