Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00350 ATGAGTTCCTCTTCTTCAAGGCCAGTGAGGAGTTACAGGCGGAGAAAGACCAATCTGGAGTTGGACCTGAACAGAGTTCCACCATTGGAGAATGTTAGAGAAGACGAGGGAACTTCCTCTGCTGAACCACAACAACGGCAGCAGCAACAAGAACTACTGGTTCCCATGATTGACGTGGAGGAAATTGAAGATGATGTTCTGGAATCTTCACCCAGGGCATTTGCTCAGGCTTCGACCAATGCGAGGAGGACTCGCAGAAGGACTACAGTGGACGTGGATTCGGAAGACCAGACCAGGGAAGCTGGTAATGATCACCGCAGACGCATAAGAGGTCACCCAATGCAACCAATGAGTGATCATGATTTTTTTATAATGTTGGAAGGCAGTAGCAGCTCTTCGGATGAAGAGGCTAGAAGGTCACCTGAACCTCCGAAGGTGCCTGTCTTCAACTGCCCAATTTGTATGGCCCCTTTTACAGAAGAAATGTCAACAAGGTGTGGCCATATTTTTTGTAAAAAGTGCATCGAAACTGCAATAGCTGCACAGGGGAAATGCCCTACCTGTAGGAAGAAGGGTCTCCATCCGAGCCTTGTTGAGGAGAAACTACAGGGTCTCCATCCGAGCCTTGTTGAGGAGAAGTGGGAATGGAAGAAACATCATTGTGCTTCGGAGATTGCGGAGTGA 684 0.4854 MSSSSSRPVRSYRRRKTNLELDLNRVPPLENVREDEGTSSAEPQQRQQQQELLVPMIDVEEIEDDVLESSPRAFAQASTNARRTRRRTTVDVDSEDQTREAGNDHRRRIRGHPMQPMSDHDFFIMLEGSSSSSDEEARRSPEPPKVPVFNCPICMAPFTEEMSTRCGHIFCKKCIETAIAAQGKCPTCRKKGLHPSLVEEKLQGLHPSLVEEKWEWKKHHCASEIAE* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00350 227 Pfam Zinc finger, C3HC4 type (RING finger) 150 188 - -
Rops1g00350 227 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Rops1g00350 227 MobiDBLite consensus disorder prediction 1 118 - -
Rops1g00350 227 SMART ring_2 151 188 IPR001841 -
Rops1g00350 227 PANTHER ELFLESS, ISOFORM B 1 191 - -
Rops1g00350 227 MobiDBLite consensus disorder prediction 84 115 - -
Rops1g00350 227 MobiDBLite consensus disorder prediction 13 40 - -
Rops1g00350 227 SUPERFAMILY RING/U-box 150 191 - -
Rops1g00350 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 227 IPR013083 -
Rops1g00350 227 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00350 Rops-Chr1 9703075 9706080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00350 1 202 C3H Transcription Factor Family AT5G48655 44.393 9.28e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00350 K22651 - jre:109013825 177.178