Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00349 ATGAGTTCCTCTTCTTCAAGGCCAGTGAGGAGTTACAGGAGGAGAAATACGAATTTGGAGTTGGACCTGAACCGTGTTCCACCCGTAGAGAATGTTAGAGAAGATGAGGGAACTTCCTCTGCTGAACCGCAGCAGCAGCAAGAACTACAGGTTCCAATGATTGACGTGGAGGCGATTGATGAAGATGTTATGGAATCTTCACCCAGGGCATTTGCTCAGGCTACGACCAATGCGAGGAGGACTCGCAGAAGGACTACAGTGGACGTGGATTCGGAAGACCGGACCAGGGAAGCTAGGAATGATCACCACAGATACATAAGAGGTCACCCAATGCAACCAATAAGTGATCGTGATCTTTTTAGACTTTTGGAAGGCAGTAGCAGCTCCGAGGATGAAGAGGCTAGAAAGTCACCTGAACCTCTGGAGGTGCCTGTCGTTAACTGCCCAATTTGTATGGCCCCTTTCGCAGAAGAAATGTCAACAAGGTGTGGCCATATTTTTTGCAAACAGTGCATTAAAACTGCAATAGCTGCTCAGGGTAAATGCCCTACATGTAGGAAGAAGGTTAATGTGAGAGAGCTAATAAGGGTTTTTCTTCCAGCAGCTAGTTAA 612 0.4706 MSSSSSRPVRSYRRRNTNLELDLNRVPPVENVREDEGTSSAEPQQQQELQVPMIDVEAIDEDVMESSPRAFAQATTNARRTRRRTTVDVDSEDRTREARNDHHRYIRGHPMQPISDRDLFRLLEGSSSSEDEEARKSPEPLEVPVVNCPICMAPFAEEMSTRCGHIFCKQCIKTAIAAQGKCPTCRKKVNVRELIRVFLPAAS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00349 203 SUPERFAMILY RING/U-box 147 191 - -
Rops1g00349 203 MobiDBLite consensus disorder prediction 63 111 - -
Rops1g00349 203 PANTHER ELFLESS, ISOFORM B 1 201 - -
Rops1g00349 203 SMART ring_2 148 185 IPR001841 -
Rops1g00349 203 MobiDBLite consensus disorder prediction 81 111 - -
Rops1g00349 203 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Rops1g00349 203 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Rops1g00349 203 Pfam Zinc finger, C3HC4 type (RING finger) 147 185 - -
Rops1g00349 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 201 IPR013083 -
Rops1g00349 203 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00349 Rops-Chr1 9683203 9686689 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00349 1 200 C3H Transcription Factor Family AT5G48655 45.498 1.10e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00349 K22651 - jre:109013825 189.889