Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00345 ATGAGTTCTTCTTCTCGTCCAGTGAGGAGTTACCGCCGAAGAAGGACCAATTTGGACATTGACCTGAACCATATTCCACCTTCAGAAAATGTTCGAGAAGGTGAAGGACCTACTGCTGAACCACAAGAACAACTAGTTCCCATAATCGATGTGGACGCAGTTGATGATGATATCACTGAATCTTCACCCGAGGCTTTTGCTCAGGCCAAGACCAATGCGAGGAGAAATCGCAGGCGAACTATTGTTGACGCGGATTTGGGAGATCGGACCAGGGAAGCTAATAATGACCCAATGCAACAAACTATTGATTGTAATCATTATATAAATTTGGAAGGCAGTAGCAGCTCTGTGAATGAAAACGATATAAAGTCACCCGATCCTCCAAAGGTGCCTGTCTTTAAATGCCCAATATGTATGGCTCCTTTGACAGAAGAAGTGTCAACAAGGTGTGGTCACATATTTTGCAAGTTAACGCCATGTCACTTAAAAGATGTAATGGAAGGAATAGAGCATCCATCTAATTGGTTCTGTGAGCCTCCTTCCGTAAACAAAGGGCAACCACAACCTTATGAACCATCATCTTCACCACCTCCGATGCTCACTCTACTCGAGGAACTCCTAGCCATGCCTACAGATATTCAAGCCTTGAAGCCTTGA 657 0.4429 MSSSSRPVRSYRRRRTNLDIDLNHIPPSENVREGEGPTAEPQEQLVPIIDVDAVDDDITESSPEAFAQAKTNARRNRRRTIVDADLGDRTREANNDPMQQTIDCNHYINLEGSSSSVNENDIKSPDPPKVPVFKCPICMAPLTEEVSTRCGHIFCKLTPCHLKDVMEGIEHPSNWFCEPPSVNKGQPQPYEPSSSPPPMLTLLEELLAMPTDIQALKP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00345 218 MobiDBLite consensus disorder prediction 1 45 - -
Rops1g00345 218 SUPERFAMILY RING/U-box 131 157 - -
Rops1g00345 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 180 IPR013083 -
Rops1g00345 218 PANTHER ELFLESS, ISOFORM B 6 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00345 Rops-Chr1 9605297 9607707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00345 14 156 C3H Transcription Factor Family AT5G48655 41.975 3.71e-26 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00345 K22651 - cave:132188663 160.999