Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00344 ATGAGTTCTTCTTCTCGTCCAGTCAGGAGTTACCGCCGAAGAAGGAGCAATTTGGACATTGACCTGAACCATATTCCACCTTCAGAAAATGTTCGAGAAGGTGAAGGACCTTCTGCTGAACCACAAGAACAACTAGTTCCCGTAATTGATGTGGAGGCAGTTGATGATGATATCACTGAATCTTCACCCGAGGCTTTTGCTCAGGCCAAGACCAATGCGAGGAGAAATCGCAGGCGAACTATTGTTGACGCGGATTTGGGAGATCGGACCAGGGAAGCTAATAATGACCCAATGCAACATTTTATTGATTGTAATCATTATATAAATTTGGAAGGCAGTAGCAGCTCTGTGAATGAAAATGATATAAAGTCACCTGATCCTCCAAAGGTGCCTGTCTTTAAATGCCCAATATGTATGGCTCCTTTGACAGAAGAAGTGTCAACAAGGTGTGGTCACATATTTTGCAAGTTAACGCCATGTCACTTAAAAGATGTAATGGAAGGAATAGAGCATCCATCTAATTGGTTCTGTGAGCCTCCTTCCGTAAACAAAGGGCAACCACAACCTACTGAACCATCATCTTCACCACCTCCGATGCTCACTCTACTCGAGGAACTCCTAGCCATGCCTAAAGAGATTCAAGCCTTGAATTTGATGCTCAGGTTGTCGAATCAGCAAAAGTCAAGGCATGAAGCCTTTGAACAATGGATGATGCATAGAATGGCAACACCGAAGGCATTCCATCTCAGGAACCTATTTCTTTCTAAGACCTTTATCGCCTTCTTCATCCAGTTTGAGAAAAATGATGGGGGTAAGGTAGCTGTCAAGGGAGATAACAACATGAAAAAACAGTGGGTTAATTTTGGTCAGATGAAGAATGGGTCTTCTTATGCGGACACAGTGAAGAAAGATCAGAGTCAGATTTGGAGCTTAAAGAAAACAGAGTTGACTAGGAAGGAAGATGAAGATAACTGGCAAGGACTGTCGAAAGAAATCAGAGAGTGGAGGCCGGATGATACCCCGAAGAAGCGTTTCACGTGGGTTAGATGTCAAGGAATCCCTGTGCATGCGTGGTCAGAGGATTTCTTTAGATTGATTGTGGCCAACTTGGGTTCTTTCATTACCATTGATGATCACACAACAACTAAGAAAAGACTAGACTTAGCAAGGGTCCTCATACAGACCTCGTATTGGGAGTTCATCAATCGGTTAATTAAGGTGAAAATTAATGAGTTGGTGTTTGATATTAGAATCATAGAAGAAATTTATGATATCCCAGTGGTGGGTGGAGTAGTAGGACCATCTTGGAATTTAATTGAGACATCAGAAAGTTCTGAGAGTTCTGATTCCTTATTGGAATATTCCGAGAGTTTGGTATCGGAATATGCTCATCTAGAAACAGTGAGGAACAAGGGGAAAGGAATCATGGCTGAATTCTCGAGCCAAGAGAAACGACTACAAAGGCAGGATGAGGTTGATGTATCGAGCCCAATGAAAGAGCTTGTAGGACAGATTGGCCTTAATGCTGTGGTGGATAGTTTATTGGTTAATTGCTTGGTAGTGGAAAGTAATGGTGGAGGTGCCCAAGAAAGTGGAAGTGAGGAGAGACATCTCGGGACTAGCTCTGGTATTAGTCTGACAGGGGACGAAGTGCAACAAGTGAGTGAGTCAGTGTTGGTTCATTATAAAGGTGAAACCGAAAATAATAATGTGGAAACTACAAGCTTGGGCTCTTCACATCTTTGGTCGAAGCAAGGGATATCTAATACTTGTTCTGCTGGTCCAATAGAAGCAAGAGTTAGTGTTGTTGGTAAAAAAAATTTACAAATGACTAAGAATATCGAGGCCCACCAGGAATTTCAATCTATGCAACATAATCATGTGGTGGGCCTACTAGAAGGAATATCAAACAAAAGAGTGGTCCAACCTTTTGTCCATAACGATAGTGTGTCGGTAGACTTGGGAAGGTCTACGAAATCAGATGCAAAGCTTATTCCTTTGTAG 2004 0.4227 MSSSSRPVRSYRRRRSNLDIDLNHIPPSENVREGEGPSAEPQEQLVPVIDVEAVDDDITESSPEAFAQAKTNARRNRRRTIVDADLGDRTREANNDPMQHFIDCNHYINLEGSSSSVNENDIKSPDPPKVPVFKCPICMAPLTEEVSTRCGHIFCKLTPCHLKDVMEGIEHPSNWFCEPPSVNKGQPQPTEPSSSPPPMLTLLEELLAMPKEIQALNLMLRLSNQQKSRHEAFEQWMMHRMATPKAFHLRNLFLSKTFIAFFIQFEKNDGGKVAVKGDNNMKKQWVNFGQMKNGSSYADTVKKDQSQIWSLKKTELTRKEDEDNWQGLSKEIREWRPDDTPKKRFTWVRCQGIPVHAWSEDFFRLIVANLGSFITIDDHTTTKKRLDLARVLIQTSYWEFINRLIKVKINELVFDIRIIEEIYDIPVVGGVVGPSWNLIETSESSESSDSLLEYSESLVSEYAHLETVRNKGKGIMAEFSSQEKRLQRQDEVDVSSPMKELVGQIGLNAVVDSLLVNCLVVESNGGGAQESGSEERHLGTSSGISLTGDEVQQVSESVLVHYKGETENNNVETTSLGSSHLWSKQGISNTCSAGPIEARVSVVGKKNLQMTKNIEAHQEFQSMQHNHVVGLLEGISNKRVVQPFVHNDSVSVDLGRSTKSDAKLIPL* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00344 667 MobiDBLite consensus disorder prediction 525 544 - -
Rops1g00344 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 233 IPR013083 -
Rops1g00344 667 PANTHER ELFLESS, ISOFORM B 6 156 - -
Rops1g00344 667 MobiDBLite consensus disorder prediction 1 44 - -
Rops1g00344 667 SUPERFAMILY RING/U-box 131 157 - -
Rops1g00344 667 Pfam Domain of unknown function (DUF4283) 335 393 IPR025558 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00344 Rops-Chr1 9575101 9581258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00344 2 156 C3H Transcription Factor Family AT5G48655 40.805 7.18e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00344 K22651 - cave:132188663 159.844