Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00343 ATGACAGAGTCAAACGCCATAGCAAATGGTTTGGCTGGAGCAGGTGGTGGTATAATTGCTCAAATCATAACTTATCCTCTTCAAACGGTGAACACACGCCAGCAAACAGAGAGAACACTCAAGAGGAACAAGCAAAACACAAGTACCACTGCTTCTGCTCCTGGCACTCTTGTTCAGATCTTTCAGGTAATTGCAAGTGAGGGATGGGGTGGACTCTATAGTGGCCTCAAGCCTTCTCTTCTTGGAACTGCAGCTTCTCAGGGTATTTACTACTATTTCTATCAAGTTTTTAAGAACAAAGCTGTGGCCATTGCAGCTGCACGGAAAATCAAAGGGCATGGAGATGGCACCGTTGGAATGTTTGGTTGGCTTGTTGTGGCTGCTATTGCTGGGTCCTTGAATGTATTGCTAACAAATCCAATATGGGTTCTAGTGACTCGTATGCAGACACATACTCAAGCAGAAAGAAAAATCATGGAGGAAAGGAAAGAGGCTTTAAGGAGGGCTGCTTCTGAAAGCAGCTTAGAAGGCTCAACATTACAAGACAAATTGGCTGAACTGAATTCCATAAAACCTCGACCATATGGAACTATTCATGCAGCTAATGAAGTCTATAATGAAGCGGGTGTAGTTGGATTTTGGAAGGGTGTCATCCCTGCTCTTATTATGGTATGCAATCCATCAATCCAGTTTATGATTTATGAGAGTTCATTAAAGCATCTAAGGGCGAAACGCTCTGCTAAGAAGCAGGGGGATAAAAGTATAACTGCTTTGGAGGTCTTTCTGGTTGGAGCAATAGCAAAACTTGGAGCAACTGTCTCAACATATCCATTACTAGTTGTCAAGTCAAGGCTTCAAGCAAAACAAGAGATCGGTGGAAGTAACACATTAAGATACTCAGGTACTTTTGATGCGGTACTTAAAATGATCCGTTATGAAGGATTTTCTGGCTTTTATAAGGGTATGAGTACAAAGATAGTACAGAGTGTTTTTGCAGCTTCTGTTCTATTCATGATTAAGGAGGAGCTTGTTAAGGCTTTCATGGTGTTGGCAGATAAGAGCAAAAAATTGTCAATAAATTTGAGTAGTTAA 1092 0.4139 MTESNAIANGLAGAGGGIIAQIITYPLQTVNTRQQTERTLKRNKQNTSTTASAPGTLVQIFQVIASEGWGGLYSGLKPSLLGTAASQGIYYYFYQVFKNKAVAIAAARKIKGHGDGTVGMFGWLVVAAIAGSLNVLLTNPIWVLVTRMQTHTQAERKIMEERKEALRRAASESSLEGSTLQDKLAELNSIKPRPYGTIHAANEVYNEAGVVGFWKGVIPALIMVCNPSIQFMIYESSLKHLRAKRSAKKQGDKSITALEVFLVGAIAKLGATVSTYPLLVVKSRLQAKQEIGGSNTLRYSGTFDAVLKMIRYEGFSGFYKGMSTKIVQSVFAASVLFMIKEELVKAFMVLADKSKKLSINLSS* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00343 363 ProSiteProfiles Solute carrier (Solcar) repeat profile. 255 346 IPR018108 -
Rops1g00343 363 Gene3D Mitochondrial carrier domain 9 357 IPR023395 -
Rops1g00343 363 ProSiteProfiles Solute carrier (Solcar) repeat profile. 118 240 IPR018108 -
Rops1g00343 363 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 100 IPR018108 -
Rops1g00343 363 Pfam Mitochondrial carrier protein 5 99 IPR018108 -
Rops1g00343 363 Pfam Mitochondrial carrier protein 118 242 IPR018108 -
Rops1g00343 363 Pfam Mitochondrial carrier protein 254 348 IPR018108 -
Rops1g00343 363 SUPERFAMILY Mitochondrial carrier 6 342 IPR023395 -
Rops1g00343 363 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 5 351 IPR044712 GO:0006862|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00343 Rops-Chr1 9561372 9566039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00343 26 359 Chloroplast and Mitochondria Gene Families AT2G47490 29.290 6.09e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00343 K13354 - gmx:100777898 597.816