Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00342 ATGGTCATGCTTGAGTGTATTGGAGTGTTAGTAGCCATTGTGTTCTTCGTATTCATCCACAATTGGAGACGCAATAGAGATGCAATTATCCCAAATTGGACAATAATTGGTATGCTACCGGCACTTTTGCATAATCTAGCTAATATTCACGATTATGTGACCTTGGTTTTGAAACAACATGGAGGCACTCTACGGTTTGAAGGACCCTGGTTCACAAACTTGAACTATATCGTTACCAGTGATCCATTAAACGTGCTCCACATCACGAGCAAGAATTTTGCAAACTACGGGAAAGGGTCCAATTTCCAAGAAATTTTTGAAGTTCTCGGAGATGGTATTTTCAATTCTGATTCCCATGAATGGAAACGGCAGAGGACAATACTTCATTCATTGCTCAAGAGGAAAAGCTTTGAAACTTTCCTTCTAAAGAATATACAGATGAAGCTGGAGAATTCCCTACTGCCATTTCTTGATCATGCATCCGAAGAAGGAGCCCAAGTGGATTTACAAGATACCTTTGAGAGGTTCACTTTTGACAGCATCTGTTCCATTCTGTTTGGATTTGATCCCGATTGCCTTCCTAAAAAATTCACTGAGCTCTCAGAGATTGCTTATGAGAAAGCTTTACCTTTGATGGAGGACGTGATATTGTACAGGCATGTCATTCCAAGATTCTTATGGAAGTTGCTGAAATGGTTCCAAATTGGTCAAGAGAAGAAGTTCAAGGTAGCCCAAGAAAATCTTGATCAATTCTTGCATGAATGCATAACATATTCCAAACGTGAAGTGCAAAGCAGATGCAGCAGCACTGAACAACTAGAAGAATCTCCTCTTGAATTGGTAAAAGCACTAATAAAAGAAGGAGCTGGGAAAGGCCAAATTGATGACAAGTATCTTAGAGACACTGCATTCAACCTCCTAGCAGCAGGAAATAGCACAATTAGTGTTGGTCTCTGTTGGTTTTTTTGGCTTGTTTCTACTCATCCAGTTGTGGAAGTTAAAATTCTTCAAGAGATCAAAGATAACTGTCTAACCCAAGAACTAAATTGGAATACTTCAGGTGTGGAAGAGCTTGGTAAGTTAGTTTACCTCCATGGGGCTATATGTGAAGCCTTGAGGCTTTTTCCTCCTGTACCTATTGAGCATAAGTGTGCAGTCAAATCTGATATACTCCCTAGTGGAGACCTTGTTAGTCCAAACACAAAGATACTGTACTTTTTGTATTCAATGGGAAGGATGGAACAAACTTGGGGAGAAGATTGCTTGGAATTTAAGCCTGAGAGATGGATATCAGAGAAGGGTCACATTATACACATACCATCTTACAAGTTCATAGCTTTCAATGCAGGGCCTAGAAGTTGTTTGGGTAAAGACATGAGCCTCATTCAAATGAAGATGGTTGCAGCTGGTATACTATGCAAGTTTCACTTACAGGTTGTGGAAGGTCATCCTGTAACTCCAAGGGTTTCTATGATTCTTGGCATGAAACATGGCTTGAAGGTCAAAGTTACTAAAAGATGCATTTCATAG 1530 0.3987 MVMLECIGVLVAIVFFVFIHNWRRNRDAIIPNWTIIGMLPALLHNLANIHDYVTLVLKQHGGTLRFEGPWFTNLNYIVTSDPLNVLHITSKNFANYGKGSNFQEIFEVLGDGIFNSDSHEWKRQRTILHSLLKRKSFETFLLKNIQMKLENSLLPFLDHASEEGAQVDLQDTFERFTFDSICSILFGFDPDCLPKKFTELSEIAYEKALPLMEDVILYRHVIPRFLWKLLKWFQIGQEKKFKVAQENLDQFLHECITYSKREVQSRCSSTEQLEESPLELVKALIKEGAGKGQIDDKYLRDTAFNLLAAGNSTISVGLCWFFWLVSTHPVVEVKILQEIKDNCLTQELNWNTSGVEELGKLVYLHGAICEALRLFPPVPIEHKCAVKSDILPSGDLVSPNTKILYFLYSMGRMEQTWGEDCLEFKPERWISEKGHIIHIPSYKFIAFNAGPRSCLGKDMSLIQMKMVAAGILCKFHLQVVEGHPVTPRVSMILGMKHGLKVKVTKRCIS* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00342 509 PANTHER CYTOCHROME P450 19 501 - -
Rops1g00342 509 Gene3D Cytochrome P450 18 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00342 509 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 447 456 IPR017972 GO:0005506|GO:0016705
Rops1g00342 509 CDD CYP86A 66 499 - -
Rops1g00342 509 SUPERFAMILY Cytochrome P450 22 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00342 509 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00342 509 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00342 509 PRINTS P450 superfamily signature 445 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00342 509 PRINTS P450 superfamily signature 454 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00342 509 PRINTS E-class P450 group I signature 454 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00342 509 PRINTS E-class P450 group I signature 444 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00342 509 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00342 509 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00342 509 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops1g00342 509 Pfam Cytochrome P450 32 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00342 Rops-Chr1 9492528 9494057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00342 1 506 Cytochrome P450 AT2G23180 43.495 9.77e-158 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00342 - - gmx:100791312 697.967