Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00341 ATGAGGTTGAGAAGATCCATTCTAGGGTTGCTCATCTCTGCCGGTTTTACGCGTTTGAGAAGGCTCATAGGCTACACCCAACAAACACATGCCAAGGCAAGGGTGTGTTGCATCACCAAGAAGGAAGAGCAGCATTTCTTTTCGTGGTACAGCCCAACACGGTCTCTTCACTCCAAGCTGAAGCTGGCAGGTGACATGACCAGTTTTAAGTCACTTGCCTTGGGCACCCATACAAGCTCGTGTTGCACCCATGATCAGCAAAGTTCACGTGAAGCACCACTTATGCACCACGTTGGGGTGGTCTCATTGTTGCTTGATAATCGTGAGCCTGAGAGTGTTCGCTTCCTAACAAGGGAAATTCACATTCTGCGTAAGCTTGATCATCCAGATGTCATAAAACTGGAAGGCCTGGTTATATCAAGGATGTCGTGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACCCGGCTGGGCTTGCATCACATCCTGGACTGAAGTTTACAGAAGCACAGGTTAAGTGTTGCATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCCGCGGTGTACTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGACAACAATGGAATCTTAAAAATTGCAGACTTTGCATCTGCTTTGAAGAATGAGTTCTTCTCCATGAAGCCTCTACCTTGTGGTCCTTCAAGCTTGCCAAAATATCCTCCCAGCAAAGAATTTGATGCTAAAGTACGAGATAAAGAAGCTAGAAGACAAGGAGCAGATCTTCGTTGTGATGGTAGAAAGAGATTGACTTATCGACCAATCAATGTTGGAACTGGAGTCATTCCCCAGGCAAATGGTTCAGCAAGAGTCAGAATGGGTGCTACAGATGTCATTGCCAGTGTGAACACCTAA 912 0.4605 MRLRRSILGLLISAGFTRLRRLIGYTQQTHAKARVCCITKKEEQHFFSWYSPTRSLHSKLKLAGDMTSFKSLALGTHTSSCCTHDQQSSREAPLMHHVGVVSLLLDNREPESVRFLTREIHILRKLDHPDVIKLEGLVISRMSCSLYLVFEYMEHDPAGLASHPGLKFTEAQVKCCMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFASALKNEFFSMKPLPCGPSSLPKYPPSKEFDAKVRDKEARRQGADLRCDGRKRLTYRPINVGTGVIPQANGSARVRMGATDVIASVNT* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00341 303 SUPERFAMILY Ribosomal protein S5 domain 2-like 259 302 IPR020568 -
Rops1g00341 303 ProSiteProfiles Protein kinase domain profile. 66 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00341 303 Pfam 3' exoribonuclease family, domain 1 271 302 IPR001247 -
Rops1g00341 303 Gene3D Transferase(Phosphotransferase) domain 1 160 225 - -
Rops1g00341 303 Pfam Protein kinase domain 114 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00341 303 Gene3D Phosphorylase Kinase; domain 1 84 159 - -
Rops1g00341 303 SMART serkin_6 66 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00341 303 Gene3D - 259 303 IPR027408 -
Rops1g00341 303 PANTHER CELL DIVISION PROTEIN KINASE 107 219 - -
Rops1g00341 303 SUPERFAMILY Protein kinase-like (PK-like) 106 222 IPR011009 -
Rops1g00341 303 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00341 Rops-Chr1 9354448 9355754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00341 98 218 Core Cell Cycle Gene Families AT5G10270 48.148 6.87e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Rops1g00341 Pkinase 1.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00341 - - pop:7462333 211.846