Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00340 ATGAGGTTGAGAAGACCCATTCTTGGGTTGCTCATCTCTGCCGGTTTTACGCGTTTGAGAAGGCTCATAGGCTACACCCAACAAACACATGCCAAGGCAAGGGTGTGTTGCATCACCAAGAAGGAAGAGCAGCGTTTCTTTTCGTGGTACAGCCCAACACGGTCTCTTCACTCCAAGCTGAAGCTGGCAGGTGACATGAGCAGTTTTAAGTCACTTGCCTTGGGCACCCATACAAGCTCGTGTTGCACCCATGATCAGCAAAGTTCACGTGAAGCACCACTTATGCACCACGTTGGGGTGGTCTCATTGTTGCTTGATAATCGTGAGCCTGAGAGTGTTCGCTTCCTAACAAGGGAAATTCACATTCTGCGTAAGCTTGATCATCCAGATGTCATAAAACTGGAAGGCCTGGTTATATCAAGGATGTCGTGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACCCGGCTGGGCTTGCATCACATCCTGGACTGAAGTTTACAGAAGCACAGGTTAAGTGTTGCATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCCGTGGTGTACTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGACAACAATGGAATCTTAAAAATTGCAGACTTTGGTTTGAATGAGTTCTTCTCCATGAAGCCTCTATCTTGTGGTCCTTCAAGCTTGCCGAAATATCCTCCCAGCAAAGAATTTGATGCTAAAGTACGAGATAAAGAAGCTAGAAGAAAAGGAGCAGTAGGAAGCCACCCATCAGCGAGCTTCATCAGCCACACGCGCAAAGTACGAGCTCCACCTGCATTACCGAGCTTCATTCTGTTTCAACTCACGCTAGGAATGGTGGGTTTATCTTTAGAAGAACAACGTTTCATCCAAGGTGGAATTGCTCAGGATCTTCGTTGTGATGGTAGAAAGAGATTGACTTATCGACCAATCAATGTTGGAACTGGAGTCATTCCCCAGGCAAATGGTTCAGCAAGAGTCAGAATGGGTGCTACAGATGTCATTGCCAGTGTGAAGGCTGAACTGGGAAAGCCAAGCTTATTGCAACCTGACAAAGGGAAGGTCTCCATACATGTTGATTGCAGTTCGACTGCAGAGCCAATCCTTAGTAAGGTAGTTGATGAATCTGATCTTCACCTTACATAG 1179 0.4631 MRLRRPILGLLISAGFTRLRRLIGYTQQTHAKARVCCITKKEEQRFFSWYSPTRSLHSKLKLAGDMSSFKSLALGTHTSSCCTHDQQSSREAPLMHHVGVVSLLLDNREPESVRFLTREIHILRKLDHPDVIKLEGLVISRMSCSLYLVFEYMEHDPAGLASHPGLKFTEAQVKCCMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLNEFFSMKPLSCGPSSLPKYPPSKEFDAKVRDKEARRKGAVGSHPSASFISHTRKVRAPPALPSFILFQLTLGMVGLSLEEQRFIQGGIAQDLRCDGRKRLTYRPINVGTGVIPQANGSARVRMGATDVIASVKAELGKPSLLQPDKGKVSIHVDCSSTAEPILSKVVDESDLHLT* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00340 392 Pfam 3' exoribonuclease family, domain 1 319 377 IPR001247 -
Rops1g00340 392 Gene3D Transferase(Phosphotransferase) domain 1 160 278 - -
Rops1g00340 392 PANTHER CELL DIVISION PROTEIN KINASE 108 241 - -
Rops1g00340 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Rops1g00340 392 Gene3D - 292 389 IPR027408 -
Rops1g00340 392 ProSiteProfiles Protein kinase domain profile. 66 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00340 392 Pfam Protein kinase domain 114 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00340 392 SMART serkin_6 66 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g00340 392 SUPERFAMILY Protein kinase-like (PK-like) 106 223 IPR011009 -
Rops1g00340 392 Gene3D Phosphorylase Kinase; domain 1 86 159 - -
Rops1g00340 392 SUPERFAMILY Ribosomal protein S5 domain 2-like 293 377 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00340 Rops-Chr1 9327858 9329287 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00340 98 222 Core Cell Cycle Gene Families AT5G10270 48.201 1.35e-32 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Rops1g00340 Pkinase 5.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00340 - - jre:109013034 218.394