Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00334 ATGTCTTTTCAAGGACTTGATCATCATCAGAGTAATGGTGTCTACTTTTTCAAGGTTATTCTTGAAAGCAGCCTTCAAGATGGAGAGCTGAGAGTGCCCAGAAGTTTTACGAGGAAGCATTGGCAAGGAATGTCAAACCCGGTTCTTCTAAGGCTTCCAAATAGTACTTTGTGGAAAGTTCATTGGATGAAACGTGATGGCTATGTTTGGTTTAACAATGGGTGGAAAGAATTTGCAGAATACTTGTCTTTGGATGTGTCACAGTTTGTGGTGTTTCAATATGAAGAAAATTCTAGCTTTGATGTGATTGTATATGGTAAAAGTGCCTTAGAAATAGAATACCCTTCAAGTATAAGATGCATAGAAGATGGTGAACAAGCTGAGGAGAGTGATGATTGTGTTGTGATTCTTGATAAGAGTGAAAGGCCCACACAACCTCTTAAGGAAAAGAAAACCAACTCAAATGGAGAAGGTAAAAAATCCTTCAAGCCACGTTTTGAAACTAACGGTGTTCCATCTCAAAGGACAGACTCTAAAGGAAAGAGAAAAATCAATGAGGATTTTGATGCAATCCAGCAAAATGTCTCAGATTCTGAAAGTCCTAACATGGAACATAATAAATTTGAGGTTTCTATAAATCAATGTTACATGAAGAATTCCCCGAATATACCAAATGAGTTCATGAAGAGACATCGTAGATGTCATGAAAAATTCGTGGAGTTGAAAATTAAGGATTATTCAAAAAGTGCATTATACATTGAGAATCTGATTGAGGAATATGTCACTTGCTATGAGGTGGCACAAATACTGATTAAGGGCCTTTCAAGCAGAAAAATTGGAGCAAGGAGCTTAAATTCTAATAACTTTGGATCACATATCATTTTCACTTTGTCATTGAGTTTAAGTTTTGCGTCACATGTTGGAGGATGTGAGGTTGATTATCTCTTGGTGGTGAAAGTCAGTCGTTGGCTCCGTTCTGATGTTGCTCCACAGGGATATCCATTAATGGCTTCGACTGAACTTGACCATTGTCCACTTGTGTCGCTGGTTGTTGTCTCTTACTCCTGCCCTCCAAGCTTCCTAACCCAGAGGATAAGGGAAGCTTTAGAAGTTGATGTTAAGAGGTCGAAGTCTGAGTTAGAGTTCGACAATGGTTTGGCGGTTAAGGAGCACTTACTTGAATTTTATGGGCAATTATGGAGCCATAGGATTTGCCTTGAGGATTTGAATCAAAGCGAAAGATCTGTTGAATTTGTTGGTAAGGCACATGCCACTAGTGTCGGTGTTTCTGATGACAGAGGGATGAATTCCTTTGATAGTAGTGATTTAGGGCTTGGCTCTGATATTGGGATAGAGGAGCGTGGGGTTGCTTCTACTGCTGGTGTGGATGAGTTTGAGTACTATTGGTGGTTTTGA 1416 0.3941 MSFQGLDHHQSNGVYFFKVILESSLQDGELRVPRSFTRKHWQGMSNPVLLRLPNSTLWKVHWMKRDGYVWFNNGWKEFAEYLSLDVSQFVVFQYEENSSFDVIVYGKSALEIEYPSSIRCIEDGEQAEESDDCVVILDKSERPTQPLKEKKTNSNGEGKKSFKPRFETNGVPSQRTDSKGKRKINEDFDAIQQNVSDSESPNMEHNKFEVSINQCYMKNSPNIPNEFMKRHRRCHEKFVELKIKDYSKSALYIENLIEEYVTCYEVAQILIKGLSSRKIGARSLNSNNFGSHIIFTLSLSLSFASHVGGCEVDYLLVVKVSRWLRSDVAPQGYPLMASTELDHCPLVSLVVVSYSCPPSFLTQRIREALEVDVKRSKSELEFDNGLAVKEHLLEFYGQLWSHRICLEDLNQSERSVEFVGKAHATSVGVSDDRGMNSFDSSDLGLGSDIGIEERGVASTAGVDEFEYYWWF* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00334 471 MobiDBLite consensus disorder prediction 144 164 - -
Rops1g00334 471 Pfam B3 DNA binding domain 16 105 IPR003340 GO:0003677
Rops1g00334 471 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Rops1g00334 471 SMART B3_2 16 108 IPR003340 GO:0003677
Rops1g00334 471 MobiDBLite consensus disorder prediction 144 182 - -
Rops1g00334 471 SUPERFAMILY DNA-binding pseudobarrel domain 10 108 IPR015300 -
Rops1g00334 471 Gene3D Kinesin motor domain 166 417 IPR036961 -
Rops1g00334 471 PANTHER B3 DOMAIN-CONTAINING 11 207 - -
Rops1g00334 471 Gene3D - 8 109 IPR015300 -
Rops1g00334 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 302 IPR027417 -
Rops1g00334 471 CDD B3_DNA 15 105 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00334 Rops-Chr1 9054611 9068344 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00334 15 201 B3 DNA Binding Superfamily AT3G18990 29.524 1.69e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops1g00334 B3 6.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00334 - - lang:109359551 177.948