Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g00331 ATGGATTATCTTCTCTCTTCAGTGAAACCCGACCCGAATTTCCCTTCAGCACCACCCGGAATCCCAACCCCAATAATAACACCAAAGCTCGAACCTTTAGATGAATGGGTTGCCACCACCACCACCCAAGAAGAACCAAACCGACCCGTTTTCTCAAATGGGTCCCACCTCAACCTCAACCTCGACCTATTCGGAGACGAAACCCTAGGTGGAGGTGGTTCCTCCGACGAGAATATCAGCTTCACCAGCAACAGCATCAACGACAACCACTTGTTATCTGAGTTCAACCGAGTCTCCGAGCTCTTCCGAACCGCGATAGCGAACGGCCTTCAGCAATGCCAAAACGACGCCGTTTCAGACCCGAATTCCCGCGCAATCGTTCCGGTCCCGGAAGCACCCAACAACAACTACAAAAACGACGCCGCTTCGTCGGTGGCCGTCACGACGCCACGTCAGCAGCGGCGGTTAAAGGAGCTGGTTCGGGTTTCCGATGTCGGAGTAAACGAACATCGACATTTCCGCGATGTGGTTAGGAGGACGAGGATGGTGTACGATTCGCTACGCGTTTTAGCGACGGTGGAAGAAGAGAGAAAGATGGATTCGGTAAAGAGGGTGAGGAGCGATTTGAGGGCTTCAGCTTTGATGAGGAACTCGAATTTGTGGCTGAATCGTGATAAGAGAATCGTTGGTGCAATCCCAGGGGTTTGCATTGGTGATGTTTTTCTCTATAGGATGGAATTGTGTGTTGTTGGTTTGCATGGTCAACCGCAAGCTGGGATTGATTATCTACCTGCTAGCATGAGTTCAAATGGTGAACCAATTGCAACTAGTGTTATAGTCTCTGGTGGGTATGAGGATGATGTGGATGAGGGTGATGTTATCATCTATTCTGGTCATGGTGGACAGGACAAGCATTCAAGGCAGGTTTTTCATCAGAAGTTGGAAGGAGGGAACCTTGCAATGGAGAGAAGTATGCATTATGAGATTGAGGTGAGGGTTATTAGAGGGGTTAGGTATGAGGGTACTGCCTCTGCTTCTAATAGGGTTTATGTCTATGATGGATTGTATAGGATTATTGAGTGTTGGTTTGATGTTGGGAAGTCTGGTTTTGGTGTTTACAAGTATAAGCTTTGGAGGATTGATGGGCAGGCTAAGATGGGTAGTGTGGTTTTGAAGGAAGCTCTTATGCTTAGGAGAGATCCGTTGTGTTTTAAACCGATGTGTTGCCTATCTCTTGATATTTCTGCAAGGAAGGAGAATGTTGTTGTGAAGCTTTTCAATGACATTGATCGGAATAATGAACCTCTTCGTTATGAGTATCTTGCAAGGACTAACTTTCCACAGTTTGTGTTTCATCAGAGTGGGAGGTCTACTGGTTGTGAGTGCGTGGATGGTTGTGTGGACGGATGCTTTTGTGCAATGAAAAATGGAGGAGAGTTTCCTTATAGTCAAGGAGGGGTTCTCTTGAGAGGGAAGCCTATAATTTTTGAATGTGGTCCCTTTTGTCGTTGTCCTCCTCATTGTCGGAACCGTGTCACGCAAAAGGGGTTGAAAAATAGGTTGGAAGTGTTTAGATCTAGGGAGACTGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCTGGTGCTTTTATCTGTGAGTACACTGGGGTTGTTCTGACTATGGAGCAAGCGCAAATTTTGACTATGAATGGTGATGGATTGATATATCCAAATCGGTTTTCTGATAGGTGGGCGGAATGGGGGGATTTATCTCTGATAGACTCCAATTATGAGCGTCCATCGTTTCCATCAATTCCTCCTTTAGATTTTGCCATGGATGTGTCAAGAATGAGGAATGTTGCTTGCTATATTAGTCACAGTTCATCCCCTAATGTGTTGGTCCAGTTTGTTCTGTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTCAGTCTTGATTATGGGGTTGCTGATGAATGGACAGGCAAGCTCTCTATATGTAACTGA 2028 0.4601 MDYLLSSVKPDPNFPSAPPGIPTPIITPKLEPLDEWVATTTTQEEPNRPVFSNGSHLNLNLDLFGDETLGGGGSSDENISFTSNSINDNHLLSEFNRVSELFRTAIANGLQQCQNDAVSDPNSRAIVPVPEAPNNNYKNDAASSVAVTTPRQQRRLKELVRVSDVGVNEHRHFRDVVRRTRMVYDSLRVLATVEEERKMDSVKRVRSDLRASALMRNSNLWLNRDKRIVGAIPGVCIGDVFLYRMELCVVGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKHSRQVFHQKLEGGNLAMERSMHYEIEVRVIRGVRYEGTASASNRVYVYDGLYRIIECWFDVGKSGFGVYKYKLWRIDGQAKMGSVVLKEALMLRRDPLCFKPMCCLSLDISARKENVVVKLFNDIDRNNEPLRYEYLARTNFPQFVFHQSGRSTGCECVDGCVDGCFCAMKNGGEFPYSQGGVLLRGKPIIFECGPFCRCPPHCRNRVTQKGLKNRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTMEQAQILTMNGDGLIYPNRFSDRWAEWGDLSLIDSNYERPSFPSIPPLDFAMDVSRMRNVACYISHSSSPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g00331 675 MobiDBLite consensus disorder prediction 1 22 - -
Rops1g00331 675 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 71 675 IPR025794 GO:0016571
Rops1g00331 675 SMART preset_2 411 503 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops1g00331 675 ProSiteProfiles YDG domain profile. 230 379 IPR003105 -
Rops1g00331 675 ProSiteProfiles Pre-SET domain profile. 458 516 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops1g00331 675 SUPERFAMILY SET domain 404 674 IPR046341 -
Rops1g00331 675 SMART set_7 519 668 IPR001214 GO:0005515
Rops1g00331 675 Pfam Pre-SET motif 414 511 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops1g00331 675 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 120 663 - -
Rops1g00331 675 Pfam SAD/SRA domain 229 383 IPR003105 -
Rops1g00331 675 SUPERFAMILY PUA domain-like 211 392 IPR015947 -
Rops1g00331 675 Gene3D SET domain 388 675 IPR046341 -
Rops1g00331 675 Gene3D - 227 387 IPR036987 -
Rops1g00331 675 ProSiteProfiles SET domain profile. 519 662 IPR001214 GO:0005515
Rops1g00331 675 Pfam SET domain 530 662 IPR001214 GO:0005515
Rops1g00331 675 SMART G9a_1 225 383 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g00331 Rops-Chr1 8903822 8913094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g00331 174 664 Su(var)3-9 homologs AT5G04940 38.800 2.20e-104 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops1g00331 SAD_SRA 3.7e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g00331 K11420 - gmx:100795514 1037.71